dsrA:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
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''dsrA''  
''dsrA''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK1952, b1954, JWR0036, IS095''<ref name='LIB:Riley_2006'/>
''ECK1952, b1954, JWR0036, IS095''<ref name='LIB:Riley_2006'/>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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*[http://biocyc.org/ECOLI/sequence?object=G7047 EcoCyc Sequence Dump]  
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W3110
W3110
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|[[PMID:7534408]]<ref name=PMID:7534408/>
[[PMID:7534408]]<ref name=PMID:7534408/>
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[[cgscmutation:90670|CGSC:90670]]
[[cgscmutation:90670|CGSC:90670]]
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!Resource!!Resource Type!!Source!!Notes/Reference
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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[[uvrC:Gene|uvrC279::Tn10]]
[[uvrC:Gene|uvrC279::Tn10]]
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est. P1 cotransduction: 27% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 27% <ref name='LIB:Nichols_linked_Tn'/>  
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[[yedZ:Gene|zed-3069::Tn10]]
[[yedZ:Gene|zed-3069::Tn10]]
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est. P1 cotransduction: 62% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 62% <ref name='LIB:Nichols_linked_Tn'/>  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7047 EcoCyc:G7047]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7047 EcoCyc:G7047]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4281 EchoBASE:EB4281]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4281 EchoBASE:EB4281]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://chase.ou.edu/macro/searchlink.php?bnum=b1954 EcoliGenExpDB:b1954]
[http://chase.ou.edu/macro/searchlink.php?bnum=b1954 EcoliGenExpDB:b1954]
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|-
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG31118 EcoGene:EG31118]
[http://ecogene.org/geneinfo.php?eg_id=EG31118 EcoGene:EG31118]
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Revision as of 18:19, 29 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dsrA

Mnemonic
Synonyms

ECK1952, b1954, JWR0036, IS095[1]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

43.61 minutes 

MG1655: 2023337..2023251
gbrowse_img.php?coord=2022251..2024337&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2027450..2027364
gbrowse_img.php?coord=2026364..2028450&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔdsrA5

CGSC:90663

dsrA1::cat

PMID:7534408[2]

CGSC:90670


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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

uvrC279::Tn10

Linked marker

CAG12156 = CGSC7394[4]

est. P1 cotransduction: 27% [5]

zed-3069::Tn10

Linked marker

CAG18451 = CGSC7395[4]

est. P1 cotransduction: 62% [5]

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7047

EchoBASE (EcoliWiki Page)

EchoBASE:EB4281

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1954

EcoGene (EcoliWiki Page)

EcoGene:EG31118


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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Sledjeski, D & Gottesman, S (1995) A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 92 2003-7 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

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