parC:Gene Product(s): Difference between revisions

Standard name	ParC product
Synonyms	DNA topoisomerase IV, subunit A product^[1], B3019 product^[2]^[1], ParC product^[2]^[1]
Product description	topoisomerase IV subunit A^[2]^[3]; Component of ; dimer of topoisomerase IV subunit A^[3]; topoisomerase IV^[3]
EC number (for enzymes)	5.99.1.-^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Aspect	Notes	Status
	GO:0005737	cytoplasm	C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006261	DNA-dependent DNA replication	P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of dimer of topoisomerase IV subunit A	could be indirect
Protein	Subunits of topoisomerase IV	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF KKSARTVGDV LGKYHPHGDS ACYEAMVLMA QPFSYRYPLV DGQGNWGAPD DPKSFAAMRY TESRLSKYSE LLLSELGQGT ADWVPNFDGT LQEPKMLPAR LPNILLNGTT GIAVGMATDI PPHNLREVAQ AAIALIDQPK TTLDQLLDIV QGPDYPTEAE IITSRAEIRK IYENGRGSVR MRAVWKKEDG AVVISALPHQ VSGARVLEQI AAQMRNKKLP MVDDLRDESD HENPTRLVIV PRSNRVDMDQ VMNHLFATTD LEKSYRINLN MIGLDGRPAV KNLLEILSEW LVFRRDTVRR RLNYRLEKVL KRLHILEGLL VAFLNIDEVI EIIRNEDEPK PALMSRFGLT ETQAEAILEL KLRHLAKLEE MKIRGEQSEL EKERDQLQGI LASERKMNNL LKKELQADAQ AYGDDRRSPL QEREEAKAMS EHDMLPSEPV TIVLSQMGWV RSAKGHDIDA PGLNYKAGDS FKAAVKGKSN QPVVFVDSTG RSYAIDPITL PSARGQGEPL TGKLTLPPGA TVDHMLMESD DQKLLMASDA GYGFVCTFND LVARNRAGKA LITLPENAHV MPPVVIEDAS DMLLAITQAG RMLMFPVSDL PQLSKGKGNK IINIPSAEAA RGEDGLAQLY VLPPQSTLTI HVGKRKIKLR PEELQKVTGE RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE
Mol. Wt	83.83 kDa (calc) ^[2]
pI
Extinction coefficient	55810 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession
X-RAY DIFFRACTION	Escherichia coli	1ZVU Structure of the full-length E. coli ParC subunit
X-RAY DIFFRACTION	Escherichia coli	1ZVT Structure of the E. coli ParC C-terminal domain
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10686-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P0AFI2
UniProt (EcoliWiki Page)	UniProt:P0AFI2
PFAM (EcoliWiki Page)	PFAM:PF00521
RefSeq (EcoliWiki Page)	RefSeq:NP_417491
ModBase (EcoliWiki Page)	ModBase:P0AFI2
PDB (EcoliWiki Page)	PDB:1ZVT
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[1]

[2]

[3]

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 <noinclude>{{TabsTop}}
 {{Tab|Quickview|parC}}{{Tab|Gene|parC}}{{Tab On|Gene Product(s)|parC}}{{Tab|Expression|parC}}{{Tab|Evolution|parC}}{{Tab|On One Page|parC}}{{TabsBottom}}
@@ Line 16: / Line 25: @@
 |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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 ==Nomenclature==
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 !{{table heading style}} |Synonyms
 |
-DNA topoisomerase IV, subunit A<ref name='LIB:Riley_2006'/>, B3019<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+DNA topoisomerase IV, subunit A product<ref name='LIB:Riley_2006'/>, B3019 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
 !{{table heading style}} |Product description
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-topoisomerase IV subunit A<ref name='LIB:EcoCyc10.6'/>; topoisomerase IV subunit A<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:dimer of topoisomerase IV subunit A|dimer of topoisomerase IV subunit A]]<ref name='LIB:EcoCyc11.1'/>; dimer of topoisomerase IV subunit A<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:topoisomerase IV|topoisomerase IV]]<ref name='LIB:EcoCyc11.1'/>; topoisomerase IV<ref name='LIB:EcoCyc11.1'/>
+topoisomerase IV subunit A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of ; [[:Category:Complex:dimer of topoisomerase IV subunit A|dimer of topoisomerase IV subunit A]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:topoisomerase IV|topoisomerase IV]]<ref name='LIB:EcoCyc11.1'/>
 |-
 !{{table heading style}} |EC number (for enzymes)
 |
-*[http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=5.99.1.- 5.99.1.-]<ref name='LIB:Riley_2006'/>
+** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=5.99.1.- 5.99.1.-]<ref name='LIB:Riley_2006'/>
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@@ Line 48: / Line 59: @@
 ==Function==
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 could be indirect
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 ===Notes===
 ==Localization==
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 !Compartment!!Description!!Evidence!!Notes
@@ Line 142: / Line 156: @@
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
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 <protect><!--Localization_notes--></protect>
 ===Notes===
 ==Structure and Physical Properties==
+{{BacktoTop}}
 <protect>
-===Physical Properties===
+<span id="Sequence"></span><big>'''Physical Properties'''</big>
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 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)
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 {{Product_physical_properties_help}}
-===Domains/Motifs/Modification Sites===
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 <!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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@@ Line 241: / Line 260: @@
 ==Gene Product Resources==
-<!--box uid=421aa90e079fa326b6494f812ad13e79..T469fec82d5c4e-->
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 ===Notes===
 ==Accessions in Other Databases==
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 <!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 ==Links==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.26428.C46aaccb7c2b24-->
+<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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-<noinclude>
 ==References==
+{{BacktoTop}}
 {{RefHelp}}
 <references/>
 __NOTOC__
-[[Category:GO:0005737]][[Category:GO:0006261]][[Category:Complex:dimer of topoisomerase IV subunit A]][[Category:Complex:topoisomerase IV]][[Category:Location:cytoplasm]]</noinclude>
+</noinclude>

parC:Gene Product(s): Difference between revisions

Revision as of 16:50, 28 July 2007

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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