nirB:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
edited by 127.0.0.1 via TableEdit
imported>WikiEntryBot
Automated import of articles
Line 21: Line 21:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
[[Category:Gene List:MG1655]][[Category:Gene List:W3110]][[Category:Genes in the Keio knockout collection]][[Category:Genes in the ASKA clone collection]]
</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
Line 40: Line 39:
!{{table_heading_style}} |Mnemonic
!{{table_heading_style}} |Mnemonic
|
|
Nitrite reductase<ref name='LIB:EcoGene'/>
 
|-
|-
!{{table_heading_style}} |Synonyms
!{{table_heading_style}} |Synonyms
Line 46: Line 45:
''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>
''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.R46a9f425bd1f5&page=17281&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.R46a9f425bd1f5&page=17281&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.R46a9f425bd1f5-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.R46a9f425bd1f5-->
Line 58: Line 57:
<protect>
<protect>
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='145047'  
{|class = 'sortable' {{Prettytable}} id='145047'  
|- {{table_heading_style}}
|- {{table_heading_style}}
Line 88: Line 92:
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:4143862..4146405&plugin_action=Go FASTA Dump]  
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:4143862..4146405&plugin_action=Go FASTA Dump]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Z46a9f426497f7-->
Line 99: Line 103:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='145048'  
{|class = 'sortable' {{Prettytable}} id='145048'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Feature type!!Location!!Description
!Feature type!!Location!!Description
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.W46a9f4270a2fa-->
Line 115: Line 124:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='145049'  
{|class = 'sortable' {{Prettytable}} id='145049'  
|- {{table_heading_style}}
|- {{table_heading_style}}
Line 137: Line 151:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.X46a9f427530b5-->
Line 148: Line 162:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='145050'  
{|class = 'sortable' {{Prettytable}} id='145050'  
|- {{table_heading_style}}
|- {{table_heading_style}}
Line 193: Line 212:
CAG18456 also carries cysG0 (CGSC).  
CAG18456 also carries cysG0 (CGSC).  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f&page=17281&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.A46a9f4281344f-->
Line 204: Line 223:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='145051'  
{|class = 'sortable' {{Prettytable}} id='145051'  
|- {{table_heading_style}}
|- {{table_heading_style}}
Line 258: Line 282:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.K46a9f428b68b7-->
Line 269: Line 293:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='99467'  
{|class = 'sortable' {{Prettytable}} id='99467'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!Name!!URL!!Comments
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847&page=17281&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.17281.Q46a70f3f69847-->
Line 286: Line 315:
__NOTOC__
__NOTOC__
</protect></noinclude>
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

Revision as of 16:25, 2 August 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


Standard name

nirB

Mnemonic
Synonyms

ECK3353, b3365, JW3328[1]

edit table

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

[back to top]


Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

75.26 minutes 

MG1655: 3492033..3494576
gbrowse_img.php?coord=3491033..3495576&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 4146405..4143862
gbrowse_img.php?coord=4142862..4147405&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

edit table

See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

[back to top]


Feature type Location Description
edit table

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

[back to top]


Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔnirB (Keio:JW3328)

deletion

deletion

PMID:16738554[2]

Shigen

edit table

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

[back to top]


Resource Resource Type Source Notes/Reference

JW3328

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCAGCAAAGTCAGACTCGCAAT

Primer 2:CCTGCGTTGTCCTCCACCAGAGT

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[4]

est. P1 cotransduction: 3% [5]

Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[4]

est. P1 cotransduction: 69% [5]

Synonyms:zhe-3084::Tn10


CAG18456 also carries cysG0 (CGSC).

edit table

See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10653

EchoBASE (EcoliWiki Page)

EchoBASE:EB0647

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3365

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4141

EcoGene (EcoliWiki Page)

EcoGene:EG10653

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:NIRB

CGSC (EcoliWiki Page)

CGSC:451

edit table

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=nirB:Gene&oldid=264403"