nrdA:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Data loaded by TableEdit_Loader.
Data loaded by TableEdit_Loader.
Line 77: Line 77:
|
|
Single Molecule Fluorescence
Single Molecule Fluorescence
|
PMID:20671182
|-
|
mRNA
|
Ecoli K-12
|
0.02047+/-0.00547
|
Molecules/cell
|
*Medium: 
*Temperature (°C): 
*Growth Rate(min):  *
*other:  *
|
|
by FISH
|
|
PMID:20671182  
PMID:20671182  

Revision as of 19:48, 20 June 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.08E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Growth Rate(min):
  • other:

emPAI

PMID:18304323[1]

Protein

Ecoli K-12

251.1+/-1.592

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Growth Rate(min): *
  • other: *

Single Molecule Fluorescence

PMID:20671182[2]

mRNA

Ecoli K-12

0.02047+/-0.00547

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Growth Rate(min): *
  • other: *

by FISH

PMID:20671182[2]

Notes

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nrdAB

Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<gbrowseImage> name=NC_000913:2342867..2342907 source=ecoli type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2234 (EcoliWiki Page)

NCBI GEO profiles for nrdA

microarray

GenExpDB:b2234 (EcoliWiki Page)

Summary of data for nrdA from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

<protect>

Notes

Accessions Related to nrdA Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10660

EchoBASE (EcoliWiki Page)

EchoBASE:EB0654

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2234

EcoGene (EcoliWiki Page)

EcoGene:EG10660



Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed
  2. ↑ 2.0 2.1 Taniguchi, Y et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329 533-8 PubMed

Categories

[back to top]