atpE:Gene Product(s): Difference between revisions

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complete  
complete  
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GO:0005886
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plasma membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0997
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C
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Seeded from [[EcoCyc]] (v14.0)
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GO:0005886
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plasma membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-1003
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C
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Seeded from [[EcoCyc]] (v14.0)
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GO:0008289
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lipid binding
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0446
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F
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Seeded from [[EcoCyc]] (v14.0)
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GO:0015078
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hydrogen ion transmembrane transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000454
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F
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Seeded from [[EcoCyc]] (v14.0)
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GO:0015078
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hydrogen ion transmembrane transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR002379
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F
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0015078
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hydrogen ion transmembrane transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR005953
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F
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Seeded from [[EcoCyc]] (v14.0)
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GO:0015986
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ATP synthesis coupled proton transport
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000454
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P
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0015986
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ATP synthesis coupled proton transport
|
GOA:interpro<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
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InterPro:IPR002379
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P
|
Seeded from [[EcoCyc]] (v14.0)
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|-
|
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GO:0015986
|
ATP synthesis coupled proton transport
|
GOA:interpro<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
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InterPro:IPR005953
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P
|
Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0016021
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integral to membrane
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
|
Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0016021
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integral to membrane
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GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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SP_SL:SL-9909
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C
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0045263
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proton-transporting ATP synthase complex, coupling factor F(o)
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000454
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C
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0045263
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proton-transporting ATP synthase complex, coupling factor F(o)
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GOA:interpro<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
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InterPro:IPR005953
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C
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0045263
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proton-transporting ATP synthase complex, coupling factor F(o)
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0138
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C
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Seeded from [[EcoCyc]] (v14.0)
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|-
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GO:0046933
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hydrogen ion transporting ATP synthase activity, rotational mechanism
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GOA:hamap<br />GO_REF:0000020
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01396
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F
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Seeded from [[EcoCyc]] (v14.0)
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Revision as of 16:16, 11 June 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpE

Synonyms

F0 sector of membrane-bound ATP synthase, subunit c[1], B3737[2][1], UncE[2][1], PapH[2][1], AtpE[2][1], dicyclohexylcarbodiimide-binding protein[2][1], lipid-binding protein[2][1], c chain[2][1]

Product description

ATP synthase, F0 complex, c subunit[2][3];

Component of c subunit complex[2][3]; ATP synthase, F0 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit c, membrane-bound, F0 sector; DCCD-binding[4]

EC number (for enzymes)


Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

PMID:2863271[5]

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

complete

Contributes to

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

PMID:2863271[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

PMID:6460031[6]

IMP: Inferred from Mutant Phenotype

C

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

GO:0008289

lipid binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0446

F

Seeded from EcoCyc (v14.0)

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

F

Seeded from EcoCyc (v14.0)

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002379

F

Seeded from EcoCyc (v14.0)

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

F

Seeded from EcoCyc (v14.0)

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

P

Seeded from EcoCyc (v14.0)

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002379

P

Seeded from EcoCyc (v14.0)

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

P

Seeded from EcoCyc (v14.0)

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

C

Seeded from EcoCyc (v14.0)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

C

Seeded from EcoCyc (v14.0)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0138

C

Seeded from EcoCyc (v14.0)

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01396

F

Seeded from EcoCyc (v14.0)


Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of c subunit complex

could be indirect

Protein

Subunits of ATP synthase, F0 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect



Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized to the periplasm with 2 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]

Inner Membrane

PMID:9237612[8]

EchoLocation:atpE



Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc

MENLNMDLLY MAAAVMMGLA AIGAAIGIGI LGGKFLEGAA RQPDLIPLLR TQFFIVMGLV
DAIPMIAVGL GLYVMFAVA
Length

79

Mol. Wt

8.256 kDa

pI

4.3 (calculated)

Extinction coefficient

2,980 (calc based on 2 Y, W, and C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

<motif_map/>

tmhmm.php?gene=atpE&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpE taxon=562,83333 </beststructure>

Models

View models at:

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:ATPE-MONOMER

UniProt (EcoliWiki Page)

UniProt:P68699

PFAM (EcoliWiki Page)

PFAM:PF00137

RefSeq (EcoliWiki Page)

RefSeq:NP_418193



Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Aris, JP et al. (1985) The Fo subunits of the Escherichia coli F1Fo-ATP synthase are sufficient to form a functional proton pore. J. Biol. Chem. 260 11207-15 PubMed
  6. ↑ Foster, DL & Fillingame, RH (1982) Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli. J. Biol. Chem. 257 2009-15 PubMed
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  8. ↑ Groth, G & Walker, JE (1997) Model of the c-subunit oligomer in the membrane domain of F-ATPases. FEBS Lett. 410 117-23 PubMed

Categories

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