psd:Gene: Difference between revisions
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Coding Start (SO:0000323) | |||
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[[MG1655]] | |||
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4387415 | |||
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Edman degradation | |||
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PMID:3042771<br /> | |||
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Revision as of 19:24, 11 May 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
psd |
|---|---|
| Mnemonic |
Phosphatidylserine decarboxylase |
| Synonyms |
ECK4156, b4160, JW4121[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
94.56 minutes |
MG1655: 4388383..4387415 |
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NC_012967: 4368515..4367547 |
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NC_012759: 4326150..4327118 |
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|
W3110 |
|
W3110: 4395040..4394072 |
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DH10B: 4488745..4487777 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
4387415 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
psdS254A |
S254A |
No processing of the proenzyme, complete loss of activity |
seeded from UniProt:P0A8K1 | ||||
|
psdS254C |
S254C |
Reduced processing, 16% wild-type activity |
seeded from UniProt:P0A8K1 | ||||
|
psdS254T |
S254T |
Reduced processing, 2% wild-type activity |
seeded from UniProt:P0A8K1 | ||||
|
psd-2(ts) |
temperature sensitive |
| |||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW4121 |
Plasmid clone |
Status:Clone OK Primer 1:GCCTTAAATTCATTTAAACTTTC Primer 2:CCGACCTGGTCTTTTTTGTCGTC | |
|
Linked marker |
est. P1 cotransduction: 30% [5] | ||
|
Linked marker |
est. P1 cotransduction: 20% [5] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Li, QX & Dowhan, W (1988) Structural characterization of Escherichia coli phosphatidylserine decarboxylase. J. Biol. Chem. 263 11516-22 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).