aldB:Gene Product(s): Difference between revisions

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===Notes===
===Notes===
 
Purification and kinetic properties of AldB described in <ref name='PMID:15659684'/>


==Gene Product Resources==
==Gene Product Resources==

Revision as of 20:34, 7 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AldB

Synonyms

aldehyde dehydrogenase B[1], B3588[2][1], YiaX[2][1], AldB[2][1]

Product description

ALDDEHYDROGB[2][3];

Component of acetaldehyde dehydrogenase[3]

Aldehyde dehydrogenase, NADP-dependent; tetrameric[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016491

oxidoreductase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR015590
SP_KW:KW-0560

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015590

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0000287

magnesium ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc [6]

complete

GO:0005515

protein binding

PMID:16606699[7]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6Y8

F

Seeded from EcoCyc [6]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0055114

oxidation reduction

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc [6]

complete

GO:0016052

carbohydrate catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009438

methylglyoxal metabolic process

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0004029

aldehyde dehydrogenase (NAD) activity

PMID:15659684[8]

IEA: Inferred from Electronic Annotation

F

complete

GO:0045471

response to ethanol

PMID:15659684[8]

IDA: Inferred from Direct Assay

P

complete

GO:0004029

aldehyde dehydrogenase (NAD) activity

PMID:15659684[8]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0016491

oxidoreductase activity

PMID:15659684[8]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of acetaldehyde dehydrogenase

could be indirect

Protein

dnaK

PMID:16606699[7]

Experiment(s):EBI-1146177
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MIAVVKLLPT GEDFASHVYP CYTSHRKETI MTNNPPSAQI KPGEYGFPLK LKARYDNFIG
GEWVAPADGE YYQNLTPVTG QLLCEVASSG KRDIDLALDA AHKVKDKWAH TSVQDRAAIL
FKIADRMEQN LELLATAETW DNGKPIRETS AADVPLAIDH FRYFASCIRA QEGGISEVDS
ETVAYHFHEP LGVVGQIIPW NFPLLMASWK MAPALAAGNC VVLKPARLTP LSVLLLMEIV
GDLLPPGVVN VVNGAGGVIG EYLATSKRIA KVAFTGSTEV GQQIMQYATQ NIIPVTLELG
GKSPNIFFAD VMDEEDAFFD KALEGFALFA FNQGEVCTCP SRALVQESIY ERFMERAIRR
VESIRSGNPL DSVTQMGAQV SHGQLETILN YIDIGKKEGA DVLTGGRRKL LEGELKDGYY
LEPTILFGQN NMRVFQEEIF GPVLAVTTFK TMEEALELAN DTQYGLGAGV WSRNGNLAYK
MGRGIQAGRV WTNCYHAYPA HAAFGGYKQS GIGRETHKMM LEHYQQTKCL LVSYSDKPLG LF
Length

542

Mol. Wt

59.695 kDa

pI

5.7 (calculated)

Extinction coefficient

69,790 - 70,790 (calc based on 21 Y, 7 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=aldB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Purification and kinetic properties of AldB described in [8]

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:ALDDEHYDROGB-MONOMER

UniProt (EcoliWiki Page)

UniProt:P37685

PFAM (EcoliWiki Page)

PFAM:PF00171

RefSeq (EcoliWiki Page)

RefSeq:NP_418045


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ 6.0 6.1 6.2 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 Ho, KK & Weiner, H (2005) Isolation and characterization of an aldehyde dehydrogenase encoded by the aldB gene of Escherichia coli. J. Bacteriol. 187 1067-73 PubMed

Categories

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