moaC:Gene: Difference between revisions

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!align=left |Standard name
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''moaC''  
''moaC''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Molybdenate
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK0772, b0783, JW0766, chlA3''<ref name='LIB:Riley_2006'/>
''ECK0772, b0783, JW0766, chlA3''<ref name='LIB:Riley_2006'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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!|Feature type!!Location!!Description
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H77A
H77A
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Reduced activity
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seeded from [http://www.uniprot.org/uniprot/P0A738 UniProt:P0A738]
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moaCK131A
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K131A
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moaCK131A
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K131A
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Reduced activity
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seeded from [http://www.uniprot.org/uniprot/P0A738 UniProt:P0A738]


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Revision as of 21:27, 25 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

moaC

Mnemonic

Molybdenate

Synonyms

ECK0772, b0783, JW0766, chlA3[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

17.63 minutes 

MG1655: 817793..818278
gbrowse_img.php?coord=817793..818278&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 811196..811681
gbrowse_img.php?coord=811196..811681&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 818992..819477
gbrowse_img.php?coord=818992..819477&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 871721..872206
gbrowse_img.php?coord=871721..872206&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmoaC (Keio:JW0766)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC8823[3]

moaC

PMID:12519969[4]

ASAP

At position 387 in Plus orientation, does not contain plasmid pKD46.
ASAP strain name: FB20237

moaCG52A

G52A

Reduced activity

seeded from UniProt:P0A738

moaCK67A

K67A

Reduced activity

seeded from UniProt:P0A738

moaCC76A

C76A

Reduced activity

seeded from UniProt:P0A738

moaCH77A

H77A

Reduced activity

seeded from UniProt:P0A738

moaCK131A

K131A

Reduced activity

seeded from UniProt:P0A738

moaCE112A

E112A

Reduced activity

seeded from UniProt:P0A738

moaCT117P

T117P

Strongly reduced activity

seeded from UniProt:P0A738

moaCD128A

D128A

Loss of activity

seeded from UniProt:P0A738

moaCG110A

G110A

Reduced activity

seeded from UniProt:P0A738

moaCK51A

K51A

Reduced activity

seeded from UniProt:P0A738

ΔmoaC755::kan

PMID:16738554[2]

CGSC:101902


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0766

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCTCGCAACTGACCCATATCAA

Primer 2:CCATCATCCGCTTCCACCTTAAA

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[3]

est. P1 cotransduction: 20% [6]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[3]

est. P1 cotransduction: 89% [6]
Synonyms:zbi-29::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11666

EchoBASE (EcoliWiki Page)

EchoBASE:EB1617

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0783

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0865

EcoGene (EcoliWiki Page)

EcoGene:EG11666

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:MOAC

CGSC (EcoliWiki Page)

CGSC:31225

ASAP (EcoliWikiPage)

ASAP:ABE-0002673


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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