yaaI:Gene: Difference between revisions
Fixing REL gene coord display. |
Automated update of mnemonics from EcoGene. |
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!align=left {{table_heading_style}} |Standard name | !align=left {{table_heading_style}} |Standard name | ||
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''yaaI'' | ''yaaI'' | ||
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!align=left {{table_heading_style}} |Mnemonic | !align=left {{table_heading_style}} |Mnemonic | ||
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Systematic nomenclature | |||
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!align=left {{table_heading_style}} |Synonyms | !align=left {{table_heading_style}} |Synonyms | ||
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{| {{Prettytable}} id="C46a9a66ca820c" class=" tableEdit Gene_allele_table" | {| {{Prettytable}} id="C46a9a66ca820c" class=" tableEdit Gene_allele_table dataTable" | ||
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments | !|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments | ||
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[[Category:Genes in the ASKA clone collection]] | [[Category:Genes in the ASKA clone collection]] | ||
[[Category:yaa genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]] | [[Category:yaa genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]] | ||
[[Category:y genes]] | |||
Revision as of 21:53, 25 February 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yaaI |
|---|---|
| Mnemonic |
Systematic nomenclature |
| Synonyms |
ECK0013, b0013, JW0012[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
0.25 minutes |
MG1655: 11786..11382 |
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NC_012967: 11784..11380 |
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W3110 |
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W3110: 11786..11382 |
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DH10B: 11786..11382 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
At position 299 in Plus orientation, does not contain plasmid pKD46. | |||||||
|
ΔyaaI (Keio:JW0012) |
deletion |
deletion |
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|
At position 299 in Plus orientation, contains plasmid pKD46. | |||||||
|
ΔyaaI733::kan |
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| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0012 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAAATCCGTTTTTACGATTTC Primer 2:CCGTCGTCGCCGATAATTTTCAG | |
|
Linked marker |
est. P1 cotransduction: 68% [6] | ||
|
Linked marker |
est. P1 cotransduction: 46% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).