fbaA:Gene Product(s): Difference between revisions

Standard name	FbaA
Synonyms	fructose-bisphosphate aldolase, class II^[1], B2925^[2]^[1], Fda^[2]^[1], Ald^[2]^[1], FbaA^[2]^[1], Fba^[2]^[1] , ald, ECK2921, fba, fda, JW2892, b2925
Product description	fructose bisphosphate aldolase^[2]^[3]; Component of fructose bisphosphate aldolase class II^[2]^[3] Fructose-bisphosphate aldolase, class II; binds Zn(II); homdomeric^[4]
EC number (for enzymes)	4.1.2.13^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0004332	fructose-bisphosphate aldolase activity	PMID:16562136^[5]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0006094	gluconeogenesis				P		Missing: evidence, reference
	GO:0004332	fructose-bisphosphate aldolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000771	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004332	fructose-bisphosphate aldolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006411	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004332	fructose-bisphosphate aldolase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:4.1.2.13	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006096	glycolysis	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000771	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006096	glycolysis	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006411	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006096	glycolysis	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0324	P	Seeded from EcoCyc (v14.0)	complete
	GO:0004332	fructose-bisphosphate aldolase activity	PMID:16562136^[5]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013785	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	PMID:11985624^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000771	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004332	fructose-bisphosphate aldolase activity	PMID:16562136^[5]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0008270	zinc ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0862	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	PMID:8436219^[7]	IDA: Inferred from Direct Assay		F		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of fructose bisphosphate aldolase class II	could be indirect
Protein	dnaK		PMID:15690043^[8]	Experiment(s):EBI-879773, EBI-884401
Protein	fldA		PMID:15690043^[8]	Experiment(s):EBI-879773
Protein	hsdR		PMID:15690043^[8]	Experiment(s):EBI-879773
Protein	rpsB		PMID:15690043^[8]	Experiment(s):EBI-879773
Protein	yfeR		PMID:15690043^[8]	Experiment(s):EBI-879773
Protein	fldA		PMID:19402753^[9]	MALDI(Z-score):17.053160
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
Cytoplasm		PMID:2649077^[10]	EchoLocation:fbaA
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSKIFDFVKP GVITGDDVQK VFQVAKENNF ALPAVNCVGT DSINAVLETA AKVKAPVIVQ FSNGGASFIA GKGVKSDVPQ GAAILGAISG AHHVHQMAEH YGVPVILHTD HCAKKLLPWI DGLLDAGEKH FAATGKPLFS SHMIDLSEES LQENIEICSK YLERMSKIGM TLEIELGCTG GEEDGVDNSH MDASALYTQP EDVDYAYTEL SKISPRFTIA ASFGNVHGVY KPGNVVLTPT ILRDSQEYVS KKHNLPHNSL NFVFHGGSGS TAQEIKDSVS YGVVKMNIDT DTQWATWEGV LNYYKANEAY LQGQLGNPKG EDQPNKKYYD PRVWLRAGQT SMIARLEKAF QELNAIDVL
Length	359
Mol. Wt	39.146 kDa
pI	5.8 (calculated)
Extinction coefficient	41,370 - 41,870 (calc based on 13 Y, 4 W, and 4 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0AB71
Domain	14..359	PF01116 Fructose-bisphosphate aldolase class-II		PMID:19920124^[11]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fbaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130826	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947415	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009600	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0AB71	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10282	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10282	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947415	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000276	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0278	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 Böck, A & Neidhardt, FC (1966) Isolation of a Mutant of Escherichia coli with a Temperature-sensitive Fructose-1,6-Diphosphate Aldolase Activity. J. Bacteriol. 92 464-9 PubMed
↑ Katayama, A et al. (2002) Systematic search for zinc-binding proteins in Escherichia coli. Eur. J. Biochem. 269 2403-13 PubMed
↑ Berry, A & Marshall, KE (1993) Identification of zinc-binding ligands in the class II fructose-1,6-bisphosphate aldolase of Escherichia coli. FEBS Lett. 318 11-6 PubMed
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Alefounder, PR et al. (1989) Cloning, sequence analysis and over-expression of the gene for the class II fructose 1,6-bisphosphate aldolase of Escherichia coli. Biochem. J. 257 529-34 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

fbaA:Gene Product(s): Difference between revisions

Latest revision as of 20:57, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="O46aac73771021"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-fructose-bisphosphate aldolase, class II<ref name='LIB:Riley_2006'/>, B2925<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fda<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ald<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FbaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fba<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''fructose-bisphosphate aldolase, class II<ref name='LIB:Riley_2006'/>, B2925<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fda<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ald<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FbaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fba<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ald, ECK2921, fba, fda, JW2892, b2925''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 58: / Line 58: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.13 4.1.2.13]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.O46aac73771021&page=26228&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.O46aac73771021-->
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aac7390ab11"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0046872
+GO:0005737
 |
-metal ion binding
+cytoplasm
 |
-GO_REF:0000004
 |
-IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0479
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
 |
-complete
+Missing: evidence, reference
 |-
 |
 |
-GO:0016829
+GO:0004332
 |
-lyase activity
+fructose-bisphosphate aldolase activity
 |
-GO_REF:0000004
+PMID:16562136
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-SP_KW:KW-0456
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 122: / Line 122: @@
 |
-GO:0008270
+GO:0006094
 |
-zinc ion binding
+gluconeogenesis
 |
-GO_REF:0000002<br />GO_REF:0000004
 |
-IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000771<br />SP_KW:KW-0862
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
-complete
+Missing: evidence, reference
 |-
 |
 |
-GO:0008152
+GO:0004332
 |
-metabolic process
+fructose-bisphosphate aldolase activity
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR013785
+InterPro:IPR000771
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 160: / Line 160: @@
 |
-GO:0006096
+GO:0004332
 |
-glycolysis
+fructose-bisphosphate aldolase activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000771<br />InterPro:IPR006411<br />SP_KW:KW-0324
+InterPro:IPR006411
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 183: / Line 183: @@
 fructose-bisphosphate aldolase activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000003
+GOA:spec<br />GO_REF:0000003
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000771<br />InterPro:IPR006411<br />EC:4.1.2.13
+EC:4.1.2.13
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 198: / Line 198: @@
 |
-GO:0003824
+GO:0006096
 |
-catalytic activity
+glycolysis
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR013785
+InterPro:IPR000771
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 217: / Line 217: @@
 |
-GO:0005515
+GO:0006096
 |
-protein binding
+glycolysis
 |
-PMID:15690043
+GOA:interpro<br />GO_REF:0000002
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0A6Y8
+InterPro:IPR006411
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-|
-|
-|
-C
-|
-Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
-|
-required fields missing
 |-
 |
 |
-GO:0003824
+GO:0006096
 |
-catalytic activity
+glycolysis
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR013785
+SP_KW:KW-0324
 |
-F
+P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 278: / Line 259: @@
 fructose-bisphosphate aldolase activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000003<br />PMID:16562136
+PMID:16562136
 |
 IMP: Inferred from Mutant Phenotype
-|
-InterPro:IPR000771<br />InterPro:IPR006411<br />EC:4.1.2.13<br />
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0005515
-|
-protein binding
-|
-PMID:15690043
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0A6Y8
 |
 F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0006096
-|
-glycolysis
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR000771<br />InterPro:IPR006411<br />SP_KW:KW-0324
-|
-P
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 335: / Line 278: @@
 metabolic process
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 343: / Line 286: @@
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 354: / Line 297: @@
 zinc ion binding
 |
-GO_REF:0000002<br />GO_REF:0000004
+PMID:11985624
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR000771<br />SP_KW:KW-0862
 |
 F
 |
-Seeded from EcoCyc
 |
 complete
@@ Line 369: / Line 312: @@
 |
-GO:0016829
+GO:0008270
 |
-lyase activity
+zinc ion binding
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0456
+InterPro:IPR000771
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 388: / Line 331: @@
 |
-GO:0046872
+GO:0004332
 |
-metal ion binding
+fructose-bisphosphate aldolase activity
 |
-GO_REF:0000004
+PMID: 16562136
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-SP_KW:KW-0479
 |
 F
 |
-Seeded from EcoCyc
 |
 complete
 |-
 |
 |
-GO:0016052
+GO:0008270
 |
-carbohydrate catabolic process
+zinc ion binding
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0862
 |
-P
+F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-GO:0004332
+GO:0008270
 |
-fructose-bisphosphate aldolase activity
+zinc ion binding
 |
-PMID: 16562136
+PMID:8436219
 |
-IMP: Inferred from Mutant Phenotype
+IDA: Inferred from Direct Assay
 |
@@ Line 441: / Line 384: @@
 |
 complete
-|-
-|
-|
-GO:0006094
-|
-gluconeogenesis
-|
-|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.Q46aac7390ab11&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-|
-|
-P
-|
-|
-required field missing
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.Q46aac7390ab11&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
 |}
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@@ Line 474: / Line 398: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 543: / Line 467: @@
 |
 Experiment(s):EBI-879773<br />
+|-
+|
+Protein
+|
+fldA
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.H46aac740ebd68&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+PMID:19402753
+|
+MALDI(Z-score):17.053160
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.H46aac740ebd68&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.H46aac740ebd68-->
@@ Line 561: / Line 496: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46a85cb9e4114"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
+|-
+|
+Cytoplasm
+|
-|-class='sortbottom'
+|
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+PMID:2649077
+|
+[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB0278 EchoLocation:fbaA]
+|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.C46a85cb9e4114&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.C46a85cb9e4114-->
@@ Line 586: / Line 532: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="V46aac743548cb"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 615: / Line 565: @@
 ,370 - 41,870 (calc based on 13 Y, 4 W, and 4 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.V46aac743548cb&page=26228&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.V46aac743548cb&page=26228&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.V46aac743548cb-->
@@ Line 630: / Line 580: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aac743c4f74"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0AB71#section_features UniProt:P0AB71]
+|
+|-
+|
+Domain
+|
+..359
+|
+[http://pfam.janelia.org/family/PF01116 PF01116  Fructose-bisphosphate aldolase class-II]
+|
+|
+PMID:19920124
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.I46aac743c4f74&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.I46aac743c4f74&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.I46aac743c4f74--></td>
@@ Line 646: / Line 618: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.A46aac7442fe7e-->
 <!--
@@ Line 654: / Line 627: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="A46aac7442fe7e"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>fbaA
+<beststructure>
-</beststructure>
+gene=fbaA
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=fbaA&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0AB71 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=fbaA&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AB71 PSI-PRED (P0AB71)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AB71 Genomes TO Protein (P0AB71)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.A46aac7442fe7e&page=26228&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.A46aac7442fe7e&page=26228&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.A46aac7442fe7e-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 691: / Line 683: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46aac74653a38"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.L46aac74653a38&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.L46aac74653a38&page=26228&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.L46aac74653a38-->
@@ Line 713: / Line 705: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aac746b2e54"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16130826 GI:16130826]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=FRUCTBISALD-CLASSII-MONOMER EcoCyc:FRUCTBISALD-CLASSII-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/NP_417400.1 GeneID:947415]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0009600
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0AB71 UniProtKB/Swiss-Prot:P0AB71]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10282
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P0AB71|UniProt:P0AB71]]
+EcoGene:EG10282
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01116 PFAM:PF01116]
+[http://www.ncbi.nlm.nih.gov/gene?term=947415 GeneID:947415]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417400 RefSeq:NP_417400]
+RegulonDB:ECK120000276
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1DOS PDB:1DOS]
+EchoBASE:EB0278
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.N46aac746b2e54&page=26228&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.N46aac746b2e54&page=26228&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.N46aac746b2e54-->
@@ Line 770: / Line 790: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46a85cc08a893"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.S46a85cc08a893&page=26228&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26228.S46a85cc08a893&page=26228&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26228.S46a85cc08a893-->
@@ Line 791: / Line 811: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0016052_!_carbohydrate catabolic process]][[Category:Complex:fructose bisphosphate aldolase class II]][[Category:Products with structures in PDB]]

fbaA:Gene Product(s): Difference between revisions

Latest revision as of 20:57, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

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