dnaK:Gene Product(s): Difference between revisions

Standard name	DnaK
Synonyms	chaperone Hsp70, co-chaperone with DnaJ^[1], B0014^[2]^[1], GrpC^[2]^[1], GrpF^[2]^[1], Seg^[2]^[1], GroP^[2]^[1], DnaL^[2]^[1], DnaK^[2]^[1] , ECK0014, groPAB, groPC, groPF, grpC, grpF, JW0013, seg, b0014
Product description	chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins^[2]^[3]; Component of DnaJ/DnaK/GrpE^[2]^[3] Hsp70 molecular chaperone, heat-inducible^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:10521435^[5]	IPI: Inferred from Physical Interaction	UniProtKB:P08622	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00332	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001023	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012725	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006260	DNA replication	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0235	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006457	protein folding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012725	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006950	response to stress	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0346	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	PMID:16858726^[6]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0051082	unfolded protein binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012725	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	PMID:11985624^[7]	IDA: Inferred from Direct Assay		F		complete
	GO:0009408	response to heat	PMID:8349564^[8]	IEP: Inferred from Expression Pattern		P		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of DnaJ/DnaK/GrpE	could be indirect
Protein	htpG		PMID:16606699^[9]	Experiment(s):EBI-1135316
Protein	aphA		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	gadA		PMID:15690043^[10]	Experiment(s):EBI-883577, EBI-888455, EBI-893820
Protein	grpE		PMID:15690043^[10]	Experiment(s):EBI-883577, EBI-881166, EBI-888219, EBI-890853
Protein	lon		PMID:15690043^[10]	Experiment(s):EBI-883577
Protein	rplF		PMID:15690043^[10]	Experiment(s):EBI-883577
Protein	rplJ		PMID:15690043^[10]	Experiment(s):EBI-883577
Protein	rpsB		PMID:15690043^[10]	Experiment(s):EBI-883577, EBI-890853
Protein	tufA		PMID:15690043^[10]	Experiment(s):EBI-883577, EBI-894882, EBI-890853
Protein	yibA		PMID:15690043^[10]	Experiment(s):EBI-883577
Protein	ydcR		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	ydfJ		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	entB		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	fabB		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	hisC		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	hscA		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	narQ		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	pepB		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	proS		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	rplI		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	rplS		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	rpmG		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	sapA		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	tdcG		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	dcuD		PMID:15690043^[10]	Experiment(s):EBI-890853
Protein	yihM		PMID:15690043^[10]	Experiment(s):EBI-890853
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
Cytoplasm		PMID:9298646^[11], PMID:1396676^[12], PMID:7783627^[13]	EchoLocation:dnaK
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MGKIIGIDLG TTNSCVAIMD GTTPRVLENA EGDRTTPSII AYTQDGETLV GQPAKRQAVT NPQNTLFAIK RLIGRRFQDE EVQRDVSIMP FKIIAADNGD AWVEVKGQKM APPQISAEVL KKMKKTAEDY LGEPVTEAVI TVPAYFNDAQ RQATKDAGRI AGLEVKRIIN EPTAAALAYG LDKGTGNRTI AVYDLGGGTF DISIIEIDEV DGEKTFEVLA TNGDTHLGGE DFDSRLINYL VEEFKKDQGI DLRNDPLAMQ RLKEAAEKAK IELSSAQQTD VNLPYITADA TGPKHMNIKV TRAKLESLVE DLVNRSIEPL KVALQDAGLS VSDIDDVILV GGQTRMPMVQ KKVAEFFGKE PRKDVNPDEA VAIGAAVQGG VLTGDVKDVL LLDVTPLSLG IETMGGVMTT LIAKNTTIPT KHSQVFSTAE DNQSAVTIHV LQGERKRAAD NKSLGQFNLD GINPAPRGMP QIEVTFDIDA DGILHVSAKD KNSGKEQKIT IKASSGLNED EIQKMVRDAE ANAEADRKFE ELVQTRNQGD HLLHSTRKQV EEAGDKLPAD DKTAIESALT ALETALKGED KAAIEAKMQE LAQVSQKLME IAQQQHAQQQ TAGADASANN AKDDDVVDAE FEEVKDKK
Length	638
Mol. Wt	69.115 kDa
pI	4.7 (calculated)
Extinction coefficient	15,930 - 16,055 (calc based on 7 Y, 1 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A6Y8
Modification Site	453	phosphorylation site at S453	probability greater than 75%	PMID:17938405^[14]
Domain	4..604	PF00012 Hsp70 protein		PMID:19920124^[15]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dnaK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Like other Hsp70 chaperones, dnaK consists of two domains: and N-terminal ATPase domain, a substrate binding domain, and a short DnaJ binding domain^[16]. Structures

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128008	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000052	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A6Y8	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10241	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10241	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944750	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000235	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944750	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0237	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Suh, WC et al. (1999) Structural features required for the interaction of the Hsp70 molecular chaperone DnaK with its cochaperone DnaJ. J. Biol. Chem. 274 30534-9 PubMed
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ Katayama, A et al. (2002) Systematic search for zinc-binding proteins in Escherichia coli. Eur. J. Biochem. 269 2403-13 PubMed
↑ Chuang, SE & Blattner, FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175 5242-52 PubMed
↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^10.00 ^10.01 ^10.02 ^10.03 ^10.04 ^10.05 ^10.06 ^10.07 ^10.08 ^10.09 ^10.10 ^10.11 ^10.12 ^10.13 ^10.14 ^10.15 ^10.16 ^10.17 ^10.18 ^10.19 ^10.20 ^10.21 ^10.22 ^10.23 ^10.24 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
↑ Schmid, D et al. (1992) Precursor of mitochondrial aspartate aminotransferase synthesized in Escherichia coli is complexed with heat-shock protein DnaK. Eur. J. Biochem. 208 699-704 PubMed
↑ Freestone, P et al. (1995) Identification of phosphoproteins in Escherichia coli. Mol. Microbiol. 15 573-80 PubMed
↑ Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
↑ Genevaux, P et al. (2007) The Hsp70 chaperone machines of Escherichia coli: a paradigm for the repartition of chaperone functions. Mol. Microbiol. 66 840-57 PubMed

dnaK:Gene Product(s): Difference between revisions

Latest revision as of 20:19, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
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 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
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 !align=left {{table heading style}} |Synonyms
 ||
-chaperone Hsp70, co-chaperone with DnaJ<ref name='LIB:Riley_2006'/>, B0014<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GrpC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GrpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Seg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GroP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''chaperone Hsp70, co-chaperone with DnaJ<ref name='LIB:Riley_2006'/>, B0014<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GrpC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GrpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Seg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GroP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0014, groPAB, groPC, groPF, grpC, grpF, JW0013, seg, b0014''
 |-
 !align=left {{table heading style}} |Product description
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+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.E46aa152b65dd7&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.E46aa152b65dd7&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
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-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46aa152cc891a"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
-|-
-|
-|
-GO:0051082
-|
-unfolded protein binding
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR012725
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0016020
-|
-membrane
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0472
-|
-C
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0006950
-|
-response to stress
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0346
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0006457
-|
-protein folding
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR012725
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0006260
-|
-DNA replication
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0235
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0963
-|
-C
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005524
-|
-ATP binding
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR001023<br />InterPro:IPR012725<br />SP_KW:KW-0067<br />HAMAP:MF_00332
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
 |-
 |
@@ Line 221: / Line 88: @@
 nucleotide binding
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 229: / Line 96: @@
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 240: / Line 107: @@
 protein binding
 |
-PMID:15690043
+PMID:10521435
 |
 IPI: Inferred from Physical Interaction
 |
-UniProtKB:P0A853
+UniProtKB:P08622
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 255: / Line 122: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:15690043
+GOA:hamap<br />GO_REF:0000020
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0AAI5
+HAMAP:MF_00332
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 274: / Line 141: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:15690043
+GOA:interpro<br />GO_REF:0000002
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0AB71
+InterPro:IPR001023
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 293: / Line 160: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:15690043
+GOA:interpro<br />GO_REF:0000002
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0AC38
+InterPro:IPR012725
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 312: / Line 179: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0AC81
+SP_KW:KW-0067
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 331: / Line 198: @@
 |
-GO:0005515
+GO:0005737
 |
-protein binding
+cytoplasm
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0ACX3
+SP_KW:KW-0963
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 350: / Line 217: @@
 |
-GO:0005515
+GO:0005737
 |
-protein binding
+cytoplasm
 |
-PMID:15690043
+GO_REF:0000023
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0ADX9
+SP_SL:SL-0086
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 369: / Line 236: @@
 |
-GO:0005515
+GO:0005886
 |
-protein binding
+plasma membrane
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P12282
+SP_KW:KW-0997
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 388: / Line 255: @@
 |
-GO:0005515
+GO:0005886
 |
-protein binding
+plasma membrane
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P23721
+SP_KW:KW-1003
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 407: / Line 274: @@
 |
-GO:0005515
+GO:0006260
 |
-protein binding
+DNA replication
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P28304
+SP_KW:KW-0235
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 426: / Line 293: @@
 |
-GO:0005515
+GO:0006457
 |
-protein binding
+protein folding
 |
-PMID:15690043
+GOA:interpro<br />GO_REF:0000002
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P37342
+InterPro:IPR012725
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 445: / Line 312: @@
 |
-GO:0005515
+GO:0006950
 |
-protein binding
+response to stress
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P45578
+SP_KW:KW-0346
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 464: / Line 331: @@
 |
-GO:0005515
+GO:0016020
 |
-protein binding
+membrane
 |
-PMID:15690043
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P69924
+SP_KW:KW-0472
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 483: / Line 350: @@
 |
-GO:0005515
+GO:0016020
 |
-protein binding
+membrane
-|
-PMID:16139413
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P21513
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P00634
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P00811
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0A6Z3
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0A9Q9
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0AG80
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0C0V0
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P10346
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P16700
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P17117
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P28635
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P30011
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P36677
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P37024
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P37685
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P46853
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P62623
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P68919
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P69822
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P76002
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:Q46796
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:16606699
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:Q46906
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
 |
 PMID:16858726
@@ Line 913: / Line 362: @@
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 920: / Line 369: @@
 |
-GO:0005886
+GO:0019898
 |
-plasma membrane
+extrinsic to membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+SP_SL:SL-9903
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 939: / Line 388: @@
 |
-GO:0000166
+GO:0051082
 |
-nucleotide binding
+unfolded protein binding
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0547
+InterPro:IPR012725
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 958: / Line 407: @@
 |
-GO:0005515
+GO:0008270
-|
-protein binding
 |
-PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:15690043<br />PMID:16139413<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699<br />PMID:16606699
+zinc ion binding
 |
-IPI: Inferred from Physical Interaction
+PMID:11985624
 |
-UniProtKB:P0A853<br />UniProtKB:P0AAI5<br />UniProtKB:P0AB71<br />UniProtKB:P0AC38<br />UniProtKB:P0AC81<br />UniProtKB:P0ACX3<br />UniProtKB:P0ADX9<br />UniProtKB:P12282<br />UniProtKB:P23721<br />UniProtKB:P28304<br />UniProtKB:P37342<br />UniProtKB:P45578<br />UniProtKB:P69924<br />UniProtKB:P21513<br />UniProtKB:P00634<br />UniProtKB:P00811<br />UniProtKB:P0A6Z3<br />UniProtKB:P0A9Q9<br />UniProtKB:P0AG80<br />UniProtKB:P0C0V0<br />UniProtKB:P10346<br />UniProtKB:P16700<br />UniProtKB:P17117<br />UniProtKB:P28635<br />UniProtKB:P30011<br />UniProtKB:P36677<br />UniProtKB:P37024<br />UniProtKB:P37685<br />UniProtKB:P46853<br />UniProtKB:P62623<br />UniProtKB:P68919<br />UniProtKB:P69822<br />UniProtKB:P76002<br />UniProtKB:Q46796<br />UniProtKB:Q46906
+IDA: Inferred from Direct Assay
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0005524
-|
-ATP binding
-|
-GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-HAMAP:MF_00332<br />InterPro:IPR001023<br />InterPro:IPR012725<br />SP_KW:KW-0067
 |
 F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0005737
-|
-cytoplasm
-|
-GO_REF:0000004<br />GO_REF:0000023<br />PMID:16858726
-|
-IDA: Inferred from Direct Assay
-|
-SP_KW:KW-0963<br />SP_SL:SL-0086<br />
-|
-C
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 1,015: / Line 426: @@
 |
-GO:0005886
+GO:0009408
-|
-plasma membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+response to heat
 |
-IEA: Inferred from Electronic Annotation
+PMID:8349564
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+IEP: Inferred from Expression Pattern
-|
-C
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0006260
-|
-DNA replication
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0235
 |
 P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006457
-|
-protein folding
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR012725
-|
-P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006950
-|
-response to stress
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0346
-|
-P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0016020
-|
-membrane
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0472
-|
-C
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006970
-|
-response to osmotic stress
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-|
-GO:0000910
-|
-cytokinesis
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
 |
-|
-GO:0051082
-|
-unfolded protein binding
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR012725
-|
-F
-|
-Seeded from EcoCyc
 |
 complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.L46aa152cc891a&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.L46aa152cc891a&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.L46aa152cc891a-->
@@ Line 1,177: / Line 455: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aa153e2a77a"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 1,478: / Line 756: @@
 Experiment(s):EBI-890853<br />
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.I46aa153e2a77a&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.I46aa153e2a77a&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.I46aa153e2a77a-->
@@ Line 1,495: / Line 773: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46a72b27abb2b"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
+|-
+|
+Cytoplasm
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.E46a72b27abb2b&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+PMID:9298646, PMID:1396676, PMID:7783627
+|
+[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB0237 EchoLocation:dnaK]
+|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.E46a72b27abb2b&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.E46a72b27abb2b-->
@@ Line 1,520: / Line 809: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="A46aa15403ce48"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 1,544: / Line 837: @@
 !align=left {{table heading style}} |Mol. Wt
 ||
-.11 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.115 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
+.7 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 16055 (calc based on 7 Y, 1 W, and 1 C residues)
+,930 - 16,055 (calc based on 7 Y, 1 W, and 1 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.A46aa15403ce48&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.A46aa15403ce48&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.A46aa15403ce48-->
@@ Line 1,569: / Line 862: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aa1540944dc"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0A6Y8#section_features UniProt:P0A6Y8]
+|
 |-
 |
 Modification Site
 |
 |
-Phosphothreonine; by autocatalysis
+phosphorylation site at S453
 |
-[http://www.uniprot.org/uniprot/P0A6Y8#section_features UniProt:P0A6Y8]
+[[PHOSIDA#p-values|probability greater than 75%]]
+|
+PMID:17938405
+|-
+|
+Domain
+|
+..604
+|
+[http://pfam.janelia.org/family/PF00012 PF00012  Hsp70 protein]
+|
+|
+PMID:19920124
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.Q46aa1540944dc&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.Q46aa1540944dc&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.Q46aa1540944dc--></td>
@@ Line 1,594: / Line 911: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.L46aa1540dc7b1-->
 <!--
@@ Line 1,602: / Line 920: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="L46aa1540dc7b1"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>dnaK
+<beststructure>
-</beststructure>
+gene=dnaK
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=dnaK&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A6Y8 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=dnaK&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A6Y8 PSI-PRED (P0A6Y8)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A6Y8 Genomes TO Protein (P0A6Y8)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.L46aa1540dc7b1&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.L46aa1540dc7b1&page=19423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.L46aa1540dc7b1-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
 Like other Hsp70 chaperones, dnaK consists of two domains: and N-terminal ATPase domain, a substrate binding domain, and a short DnaJ binding domain<ref name='PMID:17919282'/>.  Structures
@@ Line 1,639: / Line 976: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46aa15455c923"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.U46aa15455c923&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.U46aa15455c923&page=19423&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.U46aa15455c923-->
@@ Line 1,661: / Line 998: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aa1545a5298"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10241-MONOMER EcoCyc:EG10241-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/16128008 GI:16128008]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0000052
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A6Y8 UniProtKB/Swiss-Prot:P0A6Y8]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10241
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A6Y8 SwissModel:P0A6Y8]
+EcoGene:EG10241
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P0A6Y8|UniProt:P0A6Y8]]
+[http://www.ncbi.nlm.nih.gov/gene?term=944750 GeneID:944750]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.sanger.ac.uk/family?acc=PF00012 PFAM:PF00012]
+RegulonDB:ECK120000235
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414555 RefSeq:NP_414555]
+[http://www.ncbi.nlm.nig.gov/protein/Array GeneID:944750]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2BPR PDB:2BPR]
+EchoBASE:EB0237
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.G46aa1545a5298&page=19423&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.G46aa1545a5298-->
@@ Line 1,725: / Line 1,083: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46a72b3124ea7"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.A46a72b3124ea7&page=19423&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19423.A46a72b3124ea7&page=19423&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19423.A46a72b3124ea7-->
@@ Line 1,740: / Line 1,098: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006457_!_protein folding]][[Category:GO:0006970_!_response to osmotic stress]][[Category:GO:0000910_!_cytokinesis]][[Category:GO:0005737_!_cytoplasm]][[Category:Complex:DnaJ/DnaK/GrpE]][[Category:Products with structures in PDB]]

dnaK:Gene Product(s): Difference between revisions

Latest revision as of 20:19, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

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