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<!---------"WELCOME TO ECOLIWIKI" ----------->
Welcome to EcoliWiki, [http://ecolihub.org EcoliHub's] subsystem for community annotation. Our goal for EcoliWiki is to generate community-based pages about everything related to ''E. coli'' K-12, its phages, plasmids, and mobile genetic elements. Yes, we mean everything...[[EcoliWiki:Wish List|in the long run]].
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<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to [[EcoliWiki:About|EcoliWiki]],</div>
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[http://porteco.org PortEco's] (formerly EcoliHub) subsystem for community annotation. <br />
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Our goal for EcoliWiki is to generate community-based pages about <br />
==Search==
everything related to non-pathogenic ''[[Escherichia_coli|E. coli]]'', its phages, plasmids, and <br />
Get started with EcoliWiki by using the '''Search''' box to the left. Just enter your favorite ''E. coli'' gene or gene product. Or just try a search term. Don't have a favorite? Try from some of these:
mobile genetic elements. Yes, we mean everything...[[EcoliWiki:Wish List|in the long run]].
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<!----------PORTAL LIST ON RIGHT-HAND SIDE-------->
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* [[:Category:Strains|Strains]]
* [[:Category:Gene_Lists|Gene Lists]]
* [[Genome Browsers]]
* [[Phenotype Tools]]
* [https://ecoliwiki.org/tools/proteome/index.php Proteome]
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* [[:Category:Plasmids|Plasmids]]
* [[:Category:Databases|Databases]]
* [[:Category:Bioinformatics Tools|Bioinformatics Tools]]
* [[:Category:Methods|Methods]]
* [[:Category:Education|Teaching & Education]]
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* <span class="plainlinks">[http://community.porteco.org/forum/tracker.php?p=3 Wish list]</span>
* [[EcoliWiki:Membership|Membership]]
* [[:Category:Help|Help]]
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===Get Started===
Find information within EcoliWiki by using the ''Search'' box to the left. Just enter your favorite ''E. coli'' gene or gene product. You can also browse our categories if you want to see what's here. Some sample queries are listed below, and you can always read more about searching on our [[Help:Find_Info|Help pages]].
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====Search====
* [[lacZ]]  
* [[lacZ]]  
* [[cynR]]
* [[cynR]]
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* [[16S rRNA]]
* [[16S rRNA]]
* [[PMID:17182742]]
* [[PMID:17182742]]
Read more about Searching on our [[Help:Find_Info|Help pages]].
* [[DH5_alpha]]
 
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Literature searches made easy with [http://trimer.tamu.edu/textpresso TextPresso].  You can use TextPresso to search entire articles for keywords, rather than just the title and abstract!
====Browse====
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* General information about [[Escherichia_coli|''E. coli'']]
 
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==Browse==
Browse the genome using [http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/ Gbrowse] (Read more about using the genome browser on our [[Help:Gbrowse|Help pages]])
Or view lists of pages in [[Popular Categories]].  Some suggestions:
* [[:Category:Gene_List:MG1655|Genes in ''E. coli'' MG1655]]
* [[:Category:Gene_List:MG1655|Genes in ''E. coli'' MG1655]]
* [[:Category:Gene List:W3110|Genes in ''E. coli'' W3110]]
* [[:Category:Gene List:REL606|Genes in ''E. coli'' B strain REL606]]
* [[:Category:Gene_List:Phage_lambda|Genes in Bacteriophage lambda]]
* [[:Category:Gene_List:Phage_lambda|Genes in Bacteriophage lambda]]
* [[:Category:Gene_List:Phage_M13|Genes in Bacteriophage M13]]
* [[:Category:Gene_List:Phage_M13|Genes in Bacteriophage M13]]
* [[:Category:Gene_List:Phage_T7|Genes in Bacteriophage T7]]
* [[:Category:Gene_List:Phage_T7|Genes in Bacteriophage T7]]
* [[:Category:Genes_with_homologs_in_Homo_sapiens|''E. coli'' genes with human orthologs]]
* [[:Category:Genes_with_homologs_in_Homo_sapiens|''E. coli'' genes with human orthologs]]
* [[:Category:Strains|Strains]]
* [[:Category:Genes_not_mapped_to_a_genome sequence|Genes not mapped to a genome sequence]]
* [[:Category:Plasmids|Plasmids]]
* [[Phantom genes]]
* [[:Category:Databases|'''Databases''']]: Information about other online resources that may or may not be targeted for interoperation or warehousing with EcoliHub
* [http://ecoliwiki.org/tools/chemgen/index.php Data browser] for Nichols et al. Phenotypic landscape of ''E. coli''
* [[:Category:Bioinformatics Tools|'''Bioinformatics Tools''']] computational tools of interest to researchers working on ''E. coli'' and other systems.
* [http://ecoliwiki.net/tools/simnetwork/ Data browser] for Al-Amun et al. Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks
*[http://ecoliwiki.net{{SCRIPTPATH}}/index.php?title=Special%3AAllpages&from=&namespace=12 EcoliWiki Help Pages]
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==Contribute==
===How to Contribute===
EcoliWiki is for [[EcoliWiki:Who is EcoliWiki for?|everyone]].  There are lots of ways you can help us make EcoliWiki better:
EcoliWiki is for [[EcoliWiki:Who is EcoliWiki for?|everyone]].  There are lots of ways you can help us make EcoliWiki better:
* Add your knowledge to existing pages
* [[:Category:NeedsEditing|Add your knowledge to existing pages]]
* Add new pages about topics you're interested in
* [[Page_Generator|Add new pages about topics you're interested in]]
* Add links
* [[:Category:Pages with problems or questions|Fix our errors]]
* Fix our errors
* [[EcoliWiki:Wishlist|Tell us what you want to see on EcoliWiki]]
* [[EcoliWiki:Wishlist|Tell us what you want to see on EcoliWiki]].
 
EcoliWiki members can use EcoliWiki in ways that are not available to unregistered users.  Read more about user accounts at [[EcoliWiki:Membership|EcoliWiki membership]]. Or just email the EcoliWiki Team at {{Email}} if you have more questions!  
EcoliWiki participates in [http://www.geneontology.org/GO.refgenome.shtml the RefGenome project]. To see a list of the ''E. coli'' targets [http://ecoliwiki.net/colipedia/index.php/Category:RefGenome_Annotated_Gene click here].
 
EcoliWiki members can use EcoliWiki in ways that are not available to unregistered users.  Read more about user accounts at [[EcoliWiki:Membership|EcoliWiki membership]]. Or just email the EcoliWiki Team at {{Email}} if you have more questions!
 
 
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===What's New===
 


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[[Image:Microcosm.jpg|thumb|center|100px|[http://www.amazon.com/Microcosm-coli-New-Science-Life/dp/037542430X Now available!]<br /> [[Microcosm|EcoliWiki page]] ]]
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====Hot items: ====
* Customize Ecoliwiki with a <span style="font-size:larger">''[http://ecoliwiki.net/colipedia/index.php?title=Welcome_to_EcoliWiki&useskin=cavendish new skin.]''</span> You can read more [[What%27s_new%3F#New_Skin|here]].
* [http://ecoliwiki.net/tour/ EcoliWiki guided tours]
* [http://www.nature.com/news/2008/080903/full/455022a.html Nature article on WikiOmics]
* Our [[Letter to Science about wikifying genome information]]
* [http://www.new.facebook.com/group.php?gid=20845313436 EcoliHub is on FaceBook!]
* Vote: [[Are these really transcription factors?]]
* [http://www.ecolicommunity.org/index.php EcoliHub version 1.5.0 released]


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Latest revision as of 02:23, 7 November 2026

Welcome to EcoliWiki,

PortEco's (formerly EcoliHub) subsystem for community annotation.
Our goal for EcoliWiki is to generate community-based pages about
everything related to non-pathogenic E. coli, its phages, plasmids, and
mobile genetic elements. Yes, we mean everything...in the long run.

Get Started

Find information within EcoliWiki by using the Search box to the left. Just enter your favorite E. coli gene or gene product. You can also browse our categories if you want to see what's here. Some sample queries are listed below, and you can always read more about searching on our Help pages.

Search

Browse



How to Contribute

EcoliWiki is for everyone. There are lots of ways you can help us make EcoliWiki better:

EcoliWiki participates in the RefGenome project. To see a list of the E. coli targets click here.

EcoliWiki members can use EcoliWiki in ways that are not available to unregistered users. Read more about user accounts at EcoliWiki membership. Or just email the EcoliWiki Team at ecoliwiki@gmail.com if you have more questions!


What's New



Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Welcome_to_EcoliWiki&oldid=1507824"