Genome Browsers
PortEco provides genome browsers for E. coli, B. subtilis, plasmids, phage, and mobile elements. We curate and provide custom tracks for available datasets, such as alternative annotations, ChIP experiments, and mutations.
The tables below also provide links to relevant genome browsers at other sites.
Contents
E. coli
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| Genome | Links | Notes |
|---|---|---|
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ATCC_8739 |
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BL21 |
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BL21_DE3 |
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BL21_Gold_DE3 |
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BW2952 |
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DH1 |
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DH10B |
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E_coli_W |
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MDS42 |
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MG1655 |
The PortEco Gbrowse and Jbrowse are currently using version 2 of the MG1655 sequence. Version 3 is the current version at NCBI and EcoGene | |
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REL606 |
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W3110 |
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| edit table |
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B. subtilis
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| Genome | Links | Notes |
|---|---|---|
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subtilis_168 |
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| edit table |
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Bacteriophage
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| Genome | Links | Notes |
|---|---|---|
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bacteriophage_HK022 |
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bacteriophage_HK97 |
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bacteriophage_M13 |
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bacteriophage_MS2 |
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bacteriophage_Mu |
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bacteriophage_N15 |
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bacteriophage_N4 |
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bacteriophage_P1 |
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bacteriophage_P2 |
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bacteriophage_P22 |
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bacteriophage_P4 |
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bacteriophage_PRD1 |
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bacteriophage_Qbeta |
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bacteriophage_T1 |
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bacteriophage_T3 |
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bacteriophage_T4 |
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bacteriophage_T5 |
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bacteriophage_T7 |
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bacteriophage_f1 |
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bacteriophage_lambda |
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bacteriophage_phiX174 |
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| edit table |
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Plasmids
Plasmid maps provided in the porteco genome browser are for systems used for studying plasmid biology. We also have a large number of EcoliWiki pages for plasmids, including many cloning vectors, with graphical maps. <protect>
| Genome | Links | Notes |
|---|---|---|
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plasmid_ColE1 |
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plasmid_F |
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plasmid_R100 |
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plasmid_RK2 |
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| edit table |
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Mobile elements
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| Genome | Links | Notes |
|---|---|---|
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Transposon_GammaDelta |
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Transposon_Tn10 |
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Transposon_Tn1681 |
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Transposon_Tn3 |
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Transposon_Tn5 |
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Transposon_Tn7 |
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Transposon_Tn9 |
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Transposon_Tn903 |
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| edit table |
</protect>
See also
References
See Help:References for how to manage references in EcoliWiki.
