rhaS:Gene: Difference between revisions

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<noinclude>{{TabsTop}}  
<noinclude>{{TabsTop}}  
{{Tab|Quickview|rhaS}}{{Tab On|Gene|rhaS}}{{Tab|Gene Product(s)|rhaS}}{{Tab|Expression|rhaS}}{{Tab|Evolution|rhaS}}{{Tab|On One Page|rhaS}}{{TabsBottom}}
{{Tab|Quickview|rhaS}}{{Tab On|Gene|rhaS}}{{Tab|Gene Product(s)|rhaS}}{{Tab|Expression|rhaS}}{{Tab|Evolution|rhaS}}{{Tab|On One Page|rhaS}}{{TabsBottom}}
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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
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{|  id="V46aa01e7f2de7"  class=" tableEdit Gene_nomenclature_table" 
 
|-
|-
!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
|
||
''rhaS''  
''rhaS''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Rhamnose
|-
|-
!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Synonyms
|
||
''ECK3898, b3905, JW3876, rhaC, rhaC2''<ref name='LIB:Riley_2006'/>, rhaC2''


|-
|- class="tableEdit_footer"
!{{table_heading_style}} |Synonyms
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18371.V46aa01e7f2de7&page=18371&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
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''ECK3898, b3905, JW3876, rhaC, rhaC2''<ref name='LIB:Riley_2006'/>
|-
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<!--Nomenclature_notes--></protect>
<!--Nomenclature_notes--></protect>
===Notes===
===Notes===
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==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>
<protect>
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aa01e8818f2"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|-  
|
|
MG1655
MG1655
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88.28 minutes&nbsp;
88.28 minutes&nbsp;
|
|
MG1655: 4095759..4096595<br />{{GBrowseFigureByCoord|4094759|4097595|ecoli|MG1655}}
MG1655: 4095759..4096595<br /><gbrowseImage>
name=NC_000913:4095759..4096595
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10843 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10843 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:4094759..4097595 GBrowse(MG1655)]
{{GBrowseLink|MG1655|NC_000913|4094759|4097595|GBrowse(MG1655)}}
   
   
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:4095759..4096595&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|MG1655|NC_000913|4095759|4096595|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10843 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10843 EcoCyc Sequence Dump]  
|-
|-
|
[[REL606]]
|
 
|
NC_012967: 4077218..4078054<br /><gbrowseImage>
name=NC_012967:4077218..4078054
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|REL606|NC_012967|4077218|4078054|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|4077218|4078054|FASTA Dump}}
|-
|
[[BW2952]]
|
 
|
NC_012759: 3985428..3986264<br /><gbrowseImage>
name=NC_012759:3985428..3986264
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|BW2952|NC_012759|3985428|3986264|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3985428|3986264|FASTA Dump}}
|-  
|
|
W3110
W3110
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&nbsp;
&nbsp;
|
|
W3110: 3538945..3538109<br />{{GBrowseFigureByCoord|3537109|3539945|ecoli_W3110|W3110}}  
W3110: 3538945..3538109<br /><gbrowseImage>
name=NC_007779:3538109..3538945
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|3537109|3539945|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|3538109|3538945|FASTA Dump}}  
|-
|
[[DH10B]]
|
 
|
DH10B: 4195456..4196292<br /><gbrowseImage>
name=NC_010473:4195456..4196292
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:3537109..3539945 GBrowse(W3110)]
{{GBrowseLink|DH10B|NC_010473|4193784|4197964|GBrowse(DH10B)}}
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:3538109..3538945&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|DH10B|NC_010473|4193784|4197964|FASTA Dump}}
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<!--Location_notes--></protect>
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===Notes===
===Notes===
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==Sequence Features==
==Sequence Features==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aa01e94729b"  class=" tableEdit Gene_sequence_features_table" 
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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====Notes====
====Notes====
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aa01e991a35"  class=" tableEdit Gene_allele_table dataTable" 
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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&Delta;rhaS (Keio:JW3876)
|
deletion
|
deletion
|
 
|
 
|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|
|-
|
rhaSR202A
|
 
|
R202A
|
 
|
4% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS255A
|
 
|
S255A
|
 
|
80% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaST256A
|
 
|
T256A
|
 
|
61% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS249G
|
 
|
S249G
|
 
|
93% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSD250A
|
 
|
D250A
|
 
|
8.3% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS251G
|
 
|
S251G
|
 
|
87% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSF248V
|
 
|
F248V
|
 
|
3.3% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSF254A
|
 
|
F254A
|
 
|
1.2% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSL201A
|
 
|
L201A
|
 
|
48% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSF248A
|
 
|
F248A
|
 
|
0.9% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252H
|
 
|
N252H
|
 
|
0.4% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252I
|
 
|
N252I
|
 
|
0.3% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252S
|
 
|
N252S
|
 
|
37% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSH253A
|
 
|
H253A
|
 
|
48% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSH253Q
|
 
|
H253Q
|
 
|
32% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252A
|
 
|
N252A
|
 
|
31% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSH205A
|
 
|
H205A
|
 
|
28% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSR206A
|
 
|
R206A
|
 
|
0.1% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSC246A
|
 
|
C246A
|
 
|
66% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSG247A
|
 
|
G247A
|
 
|
6.2% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSG247R
|
 
|
G247R
|
 
|
0.9% of wild-type activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
xx
|
xx
|
xx
|
Growth Phenotype
|
xx
|
 
|
 
|
 
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<protect><!--Alleles_notes--></protect>
<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===


==Genetic Interactions==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S4e04c2664c9f1"  class=" tableEdit Genetic_interaction_table dataTable" 
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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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===Notes===


==Genetic Resources==
==Genetic Resources==
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!Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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JW3876
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691
 
Status:Clone OK
 
Primer 1:GCCACCGTATTACATAGTGTGGA
 
Primer 2:CCTTGCAGAAAGCCATCCCGTCC
|-
|
[[:Category:Kohara_Phage:4B6|4B6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=541 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7G8|7G8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=542 Genobase]
|
PMID:3038334
|-
|
[[yihO:Gene|zih-35::Tn10]]
|
Linked marker
|
CAG18495 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37140 CGSC7467]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 29% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[pflD:Gene|pflD501::Tn10]]
|
Linked marker
|
CAG18477 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37152 CGSC7470]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 12% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).
 
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===Notes===
===Notes===
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==Accessions in Other Databases==
==Accessions in Other Databases==
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10843 EcoCyc:EG10843] 
EcoCyc:EG10843
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0836 EchoBASE:EB0836] 
EcoGene:EG10843
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
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[http://chase.ou.edu/macro/searchlink.php?bnum=b3905 EcoliGenExpDB:b3905] 
RegulonDB:ECK120000834
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C4855 ECOL199310CYC:C4855] 
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10843 EcoGene:EG10843]
[http://www.ncbi.nlm.nih.gov/gene?term=948397 GeneID:948397]
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Escherichia coli str. K-12 substr. MG1655
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[EchoBASE]]
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[http://BioCyc.org/ECOO157/new-image?object=RHAS ECOO157CYC:RHAS] 
EchoBASE:EB0836
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[ASAP]]
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/17950 CGSC:17950] 
ASAP:ABE-0012745
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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===Notes===
===Notes===
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==Links==
==Links==
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==References==
==References==
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__NOTOC__
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===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rha genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:50, 19 September 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rhaS

Mnemonic

Rhamnose

Synonyms

ECK3898, b3905, JW3876, rhaC, rhaC2[1], rhaC2

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

88.28 minutes 

MG1655: 4095759..4096595
<gbrowseImage> name=NC_000913:4095759..4096595 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4077218..4078054
<gbrowseImage> name=NC_012967:4077218..4078054 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3985428..3986264
<gbrowseImage> name=NC_012759:3985428..3986264 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3538945..3538109
<gbrowseImage> name=NC_007779:3538109..3538945 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4195456..4196292
<gbrowseImage> name=NC_010473:4195456..4196292 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrhaS (Keio:JW3876)

deletion

deletion

PMID:16738554[2]

Shigen

rhaSR202A

R202A

4% of wild-type activity

seeded from UniProt:P09377

rhaSS255A

S255A

80% of wild-type activity

seeded from UniProt:P09377

rhaST256A

T256A

61% of wild-type activity

seeded from UniProt:P09377

rhaSS249G

S249G

93% of wild-type activity

seeded from UniProt:P09377

rhaSD250A

D250A

8.3% of wild-type activity

seeded from UniProt:P09377

rhaSS251G

S251G

87% of wild-type activity

seeded from UniProt:P09377

rhaSF248V

F248V

3.3% of wild-type activity

seeded from UniProt:P09377

rhaSF254A

F254A

1.2% of wild-type activity

seeded from UniProt:P09377

rhaSL201A

L201A

48% of wild-type activity

seeded from UniProt:P09377

rhaSF248A

F248A

0.9% of wild-type activity

seeded from UniProt:P09377

rhaSN252H

N252H

0.4% of wild-type activity

seeded from UniProt:P09377

rhaSN252I

N252I

0.3% of wild-type activity

seeded from UniProt:P09377

rhaSN252S

N252S

37% of wild-type activity

seeded from UniProt:P09377

rhaSH253A

H253A

48% of wild-type activity

seeded from UniProt:P09377

rhaSH253Q

H253Q

32% of wild-type activity

seeded from UniProt:P09377

rhaSN252A

N252A

31% of wild-type activity

seeded from UniProt:P09377

rhaSH205A

H205A

28% of wild-type activity

seeded from UniProt:P09377

rhaSR206A

R206A

0.1% of wild-type activity

seeded from UniProt:P09377

rhaSC246A

C246A

66% of wild-type activity

seeded from UniProt:P09377

rhaSG247A

G247A

6.2% of wild-type activity

seeded from UniProt:P09377

rhaSG247R

G247R

0.9% of wild-type activity

seeded from UniProt:P09377

xx

xx

xx

Growth Phenotype

xx


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3876

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCACCGTATTACATAGTGTGGA

Primer 2:CCTTGCAGAAAGCCATCCCGTCC

4B6

Kohara Phage

Genobase

PMID:3038334[4]

7G8

Kohara Phage

Genobase

PMID:3038334[4]

zih-35::Tn10

Linked marker

CAG18495 = CGSC7467[5]

est. P1 cotransduction: 29% [6]

pflD501::Tn10

Linked marker

CAG18477 = CGSC7470[5]

est. P1 cotransduction: 12% [6]
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10843

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10843

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000834

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948397

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0836

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012745

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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