Phage lambda I:Gene Product(s): Difference between revisions

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<noinclude>{{TabsTop}}
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{{Tab|Quickview|Phage lambda I}}{{Tab|Gene|Phage lambda I}}{{Tab On|Gene Product(s)|Phage lambda I}}{{Tab|Expression|Phage lambda I}}{{Tab|Evolution|Phage lambda I}}{{Tab|On One Page|Phage lambda I}}{{TabsBottom}}
{{Tab|Quickview|Phage lambda I}}{{Tab|Gene|Phage lambda I}}{{Tab On|Gene Product(s)|Phage lambda I}}{{Tab|Expression|Phage lambda I}}{{Tab|Evolution|Phage lambda I}}{{Tab|On One Page|Phage lambda I}}{{TabsBottom}}
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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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==Nomenclature==
==Nomenclature==
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|-
|-
!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
I  
I
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
I, lambdap20  
I, lambdap20
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||
tail component
tail component
|-
!align=left {{table heading style}} |EC number (for enzymes)
||


|-
!{{table heading style}} |EC number (for enzymes)
|


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==Function==
==Function==
{{BacktoTop}}
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<protect>
===Gene Ontology===
<big>'''Gene Ontology'''</big>
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit GO_table_product dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|
 
|
GO:0098015
|
virus tail
|
PMID:18621349
|
IMP: Inferred from Mutant Phenotype
|
 
|
C
|
 
|
complete
 
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{{Product_GO_help}}
===Interactions===


{{Product_interactions_help}}
<span id="Interactions"></span><big>'''Interactions '''</big>
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!|Partner Type!!Partner!!Notes!!References!!Evidence
 
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<!--Function_notes-->
===Notes===
===Notes===


==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
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===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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|-
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Name
|
||


|-
!align=left {{table heading style}} |Sequence
||
<pre>MAATHTLPLA SPGMARICLY GDLQRFGRRI DLRVKTGAEA IRALATQLPA FRQKLSDGWY
<pre>MAATHTLPLA SPGMARICLY GDLQRFGRRI DLRVKTGAEA IRALATQLPA FRQKLSDGWY
QVRIAGRDVS TSGLTAQLHE TLPDGAVIHI VPRVAGAKSG GVFQIVLGAA AIAGSFFTAG
QVRIAGRDVS TSGLTAQLHE TLPDGAVIHI VPRVAGAKSG GVFQIVLGAA AIAGSFFTAG
ATLAAWGAAI GAGGMTGILF SLGASMVLGG VAQMLAPKAR TPRIQTTDNG KQNTYFSSLD
ATLAAWGAAI GAGGMTGILF SLGASMVLGG VAQMLAPKAR TPRIQTTDNG KQNTYFSSLD
NMVAQGNVLP VLYGEMRVGS RVVSQEISTA DEGDGGQVVV IGR</pre>  
NMVAQGNVLP VLYGEMRVGS RVVSQEISTA DEGDGGQVVV IGR</pre>
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
|
||
23.12 kDa (calc) 
223
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
||
23.123 kDa
|-
|-
!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
|
||
10.4 (calculated)
|-
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!align=left {{table heading style}} |Extinction coefficient
||
16,960 - 17,085 (calc based on 4 Y, 2 W, and 1 C residues)
 
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{{Product_physical_properties_help}}
===Domains/Motifs/Modification Sites===
 
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!Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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|
Domain
|
102 - 124
|
Predicted membrane-spanning helix.
|
TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
|
|-
|
Domain
|
129 - 151
|
Predicted membrane-spanning helix.
|
TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
|
 
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{{Product_domains_motifs_help}}</td>
===Structure===
<td>
<!-- motifs column 2-->
<motif_map/>
{{TMHMM Picture|Phage_lambda_I}}
</td>
</tr>
</table>
 
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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{|   class=" tableEdit Product_structure_table" 
 
|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_lambda_I
taxon=10710
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===




==Gene Product Resources==
==Gene Product Resources==
{{BacktoTop}}
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===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
 
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|- class="tableEdit_footer"
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..O46a415eb837bf&page=103809&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040599.1 Genbank:NP_040599.1] 
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==Links==
==Links==
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!Name!!URL!!Comments
!|Name!!URL!!Comments
|-
 
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<noinclude>
<noinclude>
==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
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Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

I

Synonyms

I, lambdap20

Product description

tail component

EC number (for enzymes)


edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098015

virus tail

PMID:18621349[1]

IMP: Inferred from Mutant Phenotype

C

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAATHTLPLA SPGMARICLY GDLQRFGRRI DLRVKTGAEA IRALATQLPA FRQKLSDGWY
QVRIAGRDVS TSGLTAQLHE TLPDGAVIHI VPRVAGAKSG GVFQIVLGAA AIAGSFFTAG
ATLAAWGAAI GAGGMTGILF SLGASMVLGG VAQMLAPKAR TPRIQTTDNG KQNTYFSSLD
NMVAQGNVLP VLYGEMRVGS RVVSQEISTA DEGDGGQVVV IGR
Length

223

Mol. Wt

23.123 kDa

pI

10.4 (calculated)

Extinction coefficient

16,960 - 17,085 (calc based on 4 Y, 2 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

102 - 124

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

129 - 151

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


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<motif_map/>

tmhmm.php?gene=Phage_lambda_I&show=pic&.jpg
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Structure
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Structures

<beststructure> gene=Phage_lambda_I taxon=10710 </beststructure>

Models

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Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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  1. ↑ Kühl, PW & Katsura, I (1975) Morphogenesis of the tail of bacteriophage lambda I. In vitro intratail complementation. Virology 63 221-37 PubMed
  2. ↑ 2.0 2.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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