lpxD:Gene Product(s): Difference between revisions

Standard name	LpxD
Synonyms	UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase^[1], B0179^[2]^[1], OmsA^[2]^[1], Ssc^[2]^[1], OsmA^[2]^[1], FirA^[2]^[1], LpxD^[2]^[1] , ECK0178, firA, JW0174, omsA, ssc, b0179
Product description	UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase Lipid A biosynthesis, UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase^[3]
EC number (for enzymes)	2.3.1.-^[1] LPS biosynthesis
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0009245	lipid A biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00523	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007691	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020573	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009245	lipid A biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0441	P	Seeded from EcoCyc (v14.0)	complete
	GO:0046677	response to antibiotic	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0046	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016410	N-acyltransferase activity	PMID:3288280^[4]	IDA: Inferred from Direct Assay		F		complete
	GO:0009245	lipid A biosynthetic process	PMID:8366125^[5]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0016410	N-acyltransferase activity	PMID:8366125^[5]	IDA: Inferred from Direct Assay		F		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	uniparc:UPI00000D382C	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	ydfR	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	cbpA	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	glnS	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	pssA	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	hldD	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	rho	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	rplB	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	rplD	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rplI	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rplO	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rplU	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rpsB	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rpsC	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rpsD	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rpsE	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	rpsG	PMID:15690043^[6]	Experiment(s):EBI-886059, EBI-892599
Protein	tyrA	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	rluB	PMID:15690043^[6]	Experiment(s):EBI-886059
Protein	lpxA	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsD	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsG	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rplR	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rplB	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsR	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsI	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	sdhA	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	ycbY	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsM	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rplA	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpsC	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	phnA	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rplD	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	rpoC	PMID:16606699^[7]	Experiment(s):EBI-1135798
Protein	aspA	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	csdA	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	ccmB	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	dnaJ	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rnk	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplC	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplK	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplL	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplM	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplP	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplS	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplT	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplV	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplX	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpmG	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpsH	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpsJ	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpsP	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpsR	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rpsT	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	yfiF	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	yhbY	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	yjfI	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	ydgI	PMID:15690043^[6]	Experiment(s):EBI-892599
Protein	rplP	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):5.589311
Protein	rfaD	PMID:19402753^[8]	MALDI(Z-score):39.513239
Protein	ccmB	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	rplO	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):17.053160
Protein	rplU	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):17.053160
Protein	rplI	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):17.053160
Protein	rho	PMID:19402753^[8]	MALDI(Z-score):21.565908
Protein	rplA	PMID:19402753^[8]	MALDI(Z-score):24.027450
Protein	rplB	PMID:19402753^[8]	MALDI(Z-score):34.741324
Protein	aspA	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	rpsC	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):25.212997
Protein	rpsD	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):36.130305
Protein	pssA	PMID:19402753^[8]	MALDI(Z-score):27.424997
Protein	cbpA	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):19.850514
Protein	rplD	PMID:19402753^[8]	LCMS(ID Probability):99.0 MALDI(Z-score):20.126458
Protein	csdA	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	yfiF	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	rluB	PMID:19402753^[8]	MALDI(Z-score):31.976205
Protein	yjfI	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	rnk	PMID:19402753^[8]	LCMS(ID Probability):99.0
Protein	ydgI	PMID:19402753^[8]	LCMS(ID Probability):99.0
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MPSIRLADLA QQLDAELHGD GDIVITGVAS MQSAQTGHIT FMVNPKYREH LGLCQASAVV MTQDDLPFAK SAALVVKNPY LTYARMAQIL DTTPQPAQNI APSAVIDATA KLGNNVSIGA NAVIESGVEL GDNVIIGAGC FVGKNSKIGA GSRLWANVTI YHEIQIGQNC LIQSGTVVGA DGFGYANDRG NWVKIPQIGR VIIGDRVEIG ACTTIDRGAL DDTIIGNGVI IDNQCQIAHN VVIGDNTAVA GGVIMAGSLK IGRYCMIGGA SVINGHMEIC DKVTVTGMGM VMRPITEPGV YSSGIPLQPN KVWRKTAALV MNIDDMSKRL KSLERKVNQQ D
Length	341
Mol. Wt	36.037 kDa
pI	6.5 (calculated)
Extinction coefficient	26,930 - 27,805 (calc based on 7 Y, 3 W, and 7 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P21645
Domain	127..144	PF00132 Bacterial transferase hexapeptide (three repeats)		PMID:19920124^[9]
Domain	21..90	PF04613 UDP-3-O-[3-hydroxymyristoyl glucosamine N-acyltransferase, LpxD ]		PMID:19920124^[9]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=lpxD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128172	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944882	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000610	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P21645	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10316	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10316	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944882	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000310	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0312	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Anderson, MS et al. (1988) Biosynthesis of lipid A in Escherichia coli: identification of UDP-3-O-[(R)-3-hydroxymyristoyl]-alpha-D-glucosamine as a precursor of UDP-N2,O3-bis[(R)-3-hydroxymyristoyl]-alpha-D-glucosamine. Biochemistry 27 1908-17 PubMed
↑ ^5.0 ^5.1 Kelly, TM et al. (1993) The firA gene of Escherichia coli encodes UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase. The third step of endotoxin biosynthesis. J. Biol. Chem. 268 19866-74 PubMed
↑ ^6.00 ^6.01 ^6.02 ^6.03 ^6.04 ^6.05 ^6.06 ^6.07 ^6.08 ^6.09 ^6.10 ^6.11 ^6.12 ^6.13 ^6.14 ^6.15 ^6.16 ^6.17 ^6.18 ^6.19 ^6.20 ^6.21 ^6.22 ^6.23 ^6.24 ^6.25 ^6.26 ^6.27 ^6.28 ^6.29 ^6.30 ^6.31 ^6.32 ^6.33 ^6.34 ^6.35 ^6.36 ^6.37 ^6.38 ^6.39 ^6.40 ^6.41 ^6.42 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 ^7.11 ^7.12 ^7.13 ^7.14 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^8.00 ^8.01 ^8.02 ^8.03 ^8.04 ^8.05 ^8.06 ^8.07 ^8.08 ^8.09 ^8.10 ^8.11 ^8.12 ^8.13 ^8.14 ^8.15 ^8.16 ^8.17 ^8.18 ^8.19 ^8.20 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^9.0 ^9.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

lpxD:Gene Product(s): Difference between revisions

Latest revision as of 20:22, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase<ref name='LIB:Riley_2006'/>, B0179<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FirA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LpxD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase<ref name='LIB:Riley_2006'/>, B0179<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FirA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LpxD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0178, firA, JW0174, omsA, ssc, b0179''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 76: / Line 76: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|   id="E46aa217eddd1f"  class=" tableEdit GO_table_product dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aa217eddd1f"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
@@ Line 97: / Line 97: @@
 Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
 |
-Missing: evidence
+Missing: evidence, reference
 |-
 |
@@ Line 264: / Line 264: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|   id="J46aa218ba9e10"  class=" tableEdit Product_interactions_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aa218ba9e10"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 909: / Line 909: @@
 Protein
 |
-[[rplP:Gene_Product(s)|rplP]]
+rplP
 |
@@ Line 920: / Line 920: @@
 Protein
 |
-[[rfaD:Gene_Product(s)|rfaD]]
+rfaD
 |
@@ Line 926: / Line 926: @@
 PMID:19402753
 |
- MALDI(Z-score):39.513239
+MALDI(Z-score):39.513239
 |-
 |
 Protein
 |
-[[ccmB:Gene_Product(s)|ccmB]]
+ccmB
 |
@@ Line 942: / Line 942: @@
 Protein
 |
-[[rplO:Gene_Product(s)|rplO]]
+rplO
 |
@@ Line 953: / Line 953: @@
 Protein
 |
-[[rplU:Gene_Product(s)|rplU]]
+rplU
 |
@@ Line 964: / Line 964: @@
 Protein
 |
-[[rplI:Gene_Product(s)|rplI]]
+rplI
 |
@@ Line 975: / Line 975: @@
 Protein
 |
-[[rho:Gene_Product(s)|rho]]
+rho
 |
@@ Line 981: / Line 981: @@
 PMID:19402753
 |
- MALDI(Z-score):21.565908
+MALDI(Z-score):21.565908
 |-
 |
 Protein
 |
-[[rplA:Gene_Product(s)|rplA]]
+rplA
 |
@@ Line 992: / Line 992: @@
 PMID:19402753
 |
- MALDI(Z-score):24.027450
+MALDI(Z-score):24.027450
+|-
+|
+Protein
+|
+rplB
+|
+|
+PMID:19402753
+|
+MALDI(Z-score):34.741324
+|-
+|
+Protein
+|
+aspA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+rpsC
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0 MALDI(Z-score):25.212997
+|-
+|
+Protein
+|
+rpsD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0 MALDI(Z-score):36.130305
+|-
+|
+Protein
+|
+pssA
+|
+|
+PMID:19402753
+|
+MALDI(Z-score):27.424997
+|-
+|
+Protein
+|
+cbpA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0 MALDI(Z-score):19.850514
+|-
+|
+Protein
+|
+rplD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0 MALDI(Z-score):20.126458
+|-
+|
+Protein
+|
+csdA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+yfiF
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+rluB
+|
+|
+PMID:19402753
+|
+MALDI(Z-score):31.976205
+|-
+|
+Protein
+|
+yjfI
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+rnk
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+ydgI
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
 |- class="tableEdit_footer"
@@ Line 1,011: / Line 1,154: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|   id="S46a7b2e2d615f"  class=" tableEdit Product_localization_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46a7b2e2d615f"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Source!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |- class="tableEdit_footer"
@@ Line 1,037: / Line 1,180: @@
 ****************************************************************************************** -->{{Product_physical_properties_help}}
 {|   id="X46aa218d6786c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 1,080: / Line 1,227: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|   id="D46aa218dc0141"  class=" tableEdit Product_motif_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46aa218dc0141"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
 !|Type!!Residues!!Description!!Notes!!References
@@ Line 1,151: / Line 1,298: @@
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P21645 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P21645 PSI-PRED (P21645)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P21645 Genomes TO Protein (P21645)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 |- class="tableEdit_footer"
@@ Line 1,196: / Line 1,341: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|   id="B46aa218e5ede9"  class=" tableEdit Product_resource_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46aa218e5ede9"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
@@ Line 1,218: / Line 1,363: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|   id="V46aa218ea8213"  class=" tableEdit Gene_accessions_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46aa218ea8213"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO EcoCyc:UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO]
+[http://www.ncbi.nlm.nih.gov/protein/16128172 GI:16128172]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_414721.1 GeneID:944882]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0000610
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P21645 UniProtKB/Swiss-Prot:P21645]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10316
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10316
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.uniprot.org/uniprot/P21645 UniProt:P21645]
+[http://www.ncbi.nlm.nih.gov/gene?term=944882 GeneID:944882]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.janelia.org/protein/P21645 Pfam:P21645]
+RegulonDB:ECK120000310
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414721 RefSeq:NP_414721]
+EchoBASE:EB0312
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |- class="tableEdit_footer"
@@ Line 1,268: / Line 1,448: @@
 *
 ****************************************************************************************** -->
-{|   id="J46a7b2e80fe27"  class=" tableEdit Links_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a7b2e80fe27"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments

lpxD:Gene Product(s): Difference between revisions

Latest revision as of 20:22, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

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