atpE:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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F0 sector of membrane-bound ATP synthase, subunit c<ref name='LIB:Riley_2006'/>, B3737<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dicyclohexylcarbodiimide-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lipid-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, c chain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''F0 sector of membrane-bound ATP synthase, subunit c<ref name='LIB:Riley_2006'/>, B3737<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dicyclohexylcarbodiimide-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lipid-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, c chain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3730, JW3715, papH, uncE, b3737''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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2,980 (calc based on 2 Y, W, and C residues)
2,980 (calc based on 2 Y, 0 W, and 0 C residues)


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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/A5A609 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P68699 PSI-PRED (P68699)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P68699 Genomes TO Protein (P68699)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/16131605 GI:16131605]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/NP_418193.1 GeneID:948253]
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Escherichia coli str. K-12 substr. MG1655
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[[ASAP]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=ATPE-MONOMER EcoCyc:ATPE-MONOMER]
ASAP:ABE-0012220
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.uniprot.org/uniprot/P68699 UniProtKB/Swiss-Prot:P68699]
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Escherichia coli str. K-12 substr. MG1655
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[[EcoCyc]]
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EcoCyc:EG10102
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10102
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[[uniprot:P68699|UniProt:P68699]]
[http://www.ncbi.nlm.nih.gov/gene?term=948253 GeneID:948253]
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Escherichia coli str. K-12 substr. MG1655
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
[[RegulonDB]]
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[http://pfam.janelia.org/protein/P68699 Pfam:P68699]
RegulonDB:ECK120000098
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418193 RefSeq:NP_418193]
EchoBASE:EB0100
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 21:07, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpE

Synonyms

F0 sector of membrane-bound ATP synthase, subunit c[1], B3737[2][1], UncE[2][1], PapH[2][1], AtpE[2][1], dicyclohexylcarbodiimide-binding protein[2][1], lipid-binding protein[2][1], c chain[2][1] , ECK3730, JW3715, papH, uncE, b3737

Product description

ATP synthase, F0 complex, c subunit[2][3];

Component of c subunit complex[2][3]; ATP synthase, F0 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit c, membrane-bound, F0 sector; DCCD-binding[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

PMID:2863271[5]

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0046961

proton-transporting ATPase activity, rotational mechanism

PMID:2863271[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

PMID:6460031[6]

IMP: Inferred from Mutant Phenotype

C

complete

GO:0008289

lipid binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0446

F

Seeded from EcoCyc (v14.0)

complete

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

F

Seeded from EcoCyc (v14.0)

complete

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002379

F

Seeded from EcoCyc (v14.0)

complete

GO:0015078

hydrogen ion transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

F

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002379

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

P

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000454

C

Seeded from EcoCyc (v14.0)

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005953

C

Seeded from EcoCyc (v14.0)

complete

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0138

C

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01396

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of c subunit complex

could be indirect

Protein

Subunits of ATP synthase, F0 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect


edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized to the periplasm with 2 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]

Inner Membrane

PMID:9237612[8]

EchoLocation:atpE


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MENLNMDLLY MAAAVMMGLA AIGAAIGIGI LGGKFLEGAA RQPDLIPLLR TQFFIVMGLV
DAIPMIAVGL GLYVMFAVA
Length

79

Mol. Wt

8.256 kDa

pI

4.3 (calculated)

Extinction coefficient

2,980 (calc based on 2 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

8..77

PF00137 ATP synthase subunit C

PMID:19920124[9]

edit table

<motif_map/>

tmhmm.php?gene=atpE&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpE taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131605

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948253

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012220

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P68699

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10102

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10102

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948253

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000098

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0100

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Aris, JP et al. (1985) The Fo subunits of the Escherichia coli F1Fo-ATP synthase are sufficient to form a functional proton pore. J. Biol. Chem. 260 11207-15 PubMed
  6. ↑ Foster, DL & Fillingame, RH (1982) Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli. J. Biol. Chem. 257 2009-15 PubMed
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  8. ↑ Groth, G & Walker, JE (1997) Model of the c-subunit oligomer in the membrane domain of F-ATPases. FEBS Lett. 410 117-23 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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