rhaS:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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*  
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{| id="V46aa01e7f2de7"  class=" tableEdit Gene_nomenclature_table"   
{|   id="V46aa01e7f2de7"  class=" tableEdit Gene_nomenclature_table"   


|-
|-
!align=left |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''rhaS''  
''rhaS''
|-
|-
!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Rhamnose
|-
|-
!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK3898, b3905, JW3876, rhaC, rhaC2''<ref name='LIB:Riley_2006'/>
''ECK3898, b3905, JW3876, rhaC, rhaC2''<ref name='LIB:Riley_2006'/>, rhaC2''


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*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|   id="Q46aa01e8818f2"  class=" tableEdit Gene_location_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aa01e8818f2"  class=" tableEdit Gene_location_table"   
|-
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-  
|-  
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88.28 minutes&nbsp;
88.28 minutes&nbsp;
|
|
MG1655: 4095759..4096595<br />{{GBrowseFigureByCoord|4095759|4096595|ecoli|MG1655}}
MG1655: 4095759..4096595<br /><gbrowseImage>
name=NC_000913:4095759..4096595
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10843 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10843 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|4094759|4097595|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|4094759|4097595|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|4095759|4096595|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|4095759|4096595|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10843 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10843 EcoCyc Sequence Dump]  
|-  
|-  
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|
|
NC_012967: 4077218..4078054<br />{{GBrowseFigureByCoord|4077218|4078054|REL606|NC_012967}}
NC_012967: 4077218..4078054<br /><gbrowseImage>
name=NC_012967:4077218..4078054
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|4077218|4078054|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|4077218|4078054|GBrowse (REL606)}}
|
|
{{GBrowseFastaLink|REL606|NC_012967|4077218|4078054|FASTA Dump}}  
{{GBrowseFastaLink|REL606|NC_012967|4077218|4078054|FASTA Dump}}  
|-
|
[[BW2952]]
|
|
NC_012759: 3985428..3986264<br /><gbrowseImage>
name=NC_012759:3985428..3986264
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|3985428|3986264|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3985428|3986264|FASTA Dump}}
|-  
|-  
|
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&nbsp;
&nbsp;
|
|
W3110: 3538945..3538109<br />{{GBrowseFigureByCoord|3538109|3538945|ecoli_W3110|W3110}}
W3110: 3538945..3538109<br /><gbrowseImage>
name=NC_007779:3538109..3538945
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|3537109|3539945|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|3537109|3539945|GBrowse(W3110)}}  
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3538109|3538945|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|3538109|3538945|FASTA Dump}}  
|-  
|-  
|
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|
|
DH10B: 4195456..4196292<br />{{GBrowseFigureByCoord|4195456|4196292|ecoli_DH10B|DH10B}}
DH10B: 4195456..4196292<br /><gbrowseImage>
name=NC_010473:4195456..4196292
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|4193784|4197964|GBrowse(DH10B)}}
{{GBrowseLink|DH10B|NC_010473|4193784|4197964|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|4193784|4197964|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|4193784|4197964|FASTA Dump}}  


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*  
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****************************************************************************************** -->{{Gene_sequence_features_help}}
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{|   id="Y46aa01e94729b"  class=" tableEdit Gene_sequence_features_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aa01e94729b"  class=" tableEdit Gene_sequence_features_table"   
|-
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


|- class="tableEdit_footer"  
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18371.Y46aa01e94729b&page=18371&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
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*  
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****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{| {{Prettytable}} id="Q46aa01e991a35"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46aa01e991a35"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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|
|
4% of wild-type activity
4% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS255A
|
|
S255A
|
|
80% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaST256A
|
|
T256A
|
|
61% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS249G
|
|
S249G
|
|
93% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSD250A
|
|
D250A
|
|
8.3% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSS251G
|
|
S251G
|
|
87% of wild-type activity
|
|


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|
|
3.3% of wild-type activity
3.3% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSF254A
|
|
F254A
|
|
1.2% of wild-type activity
|
|


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|
|
0.9% of wild-type activity
0.9% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252H
|
|
N252H
|
|
0.4% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252I
|
|
N252I
|
|
0.3% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252S
|
|
N252S
|
|
37% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSH253A
|
|
H253A
|
|
48% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSH253Q
|
|
H253Q
|
|
32% of wild-type activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
|-
|
rhaSN252A
|
|
N252A
|
|
31% of wild-type activity
|
|


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|
   
   
|-
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rhaSS249G
|


|
|- class="tableEdit_footer"
S249G
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35&page=18371&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
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<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35-->
 
<protect><!--Alleles_notes--></protect>
===Notes===


|
93% of wild-type activity
|


|


|
==Genetic Interactions==
seeded from [http://www.uniprot.org/uniprot/P09377 UniProt:P09377]
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.18371.S4e04c2664c9f1-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **
*
****************************************************************************************** -->{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S4e04c2664c9f1"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35&page=18371&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.18371.S4e04c2664c9f1&page=18371&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
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<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.18371.S4e04c2664c9f1--></protect>


<protect><!--Alleles_notes--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===
===Notes===


==Genetic Resources==
==Genetic Resources==
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*  
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****************************************************************************************** -->{{Gene_resources_help}}
{|   id="A46aa01ea56e0f"  class=" tableEdit Gene_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aa01ea56e0f"  class=" tableEdit Gene_resource_table"   
|-
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
|-  
|-  
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Primer 2:CCTTGCAGAAAGCCATCCCGTCC  
Primer 2:CCTTGCAGAAAGCCATCCCGTCC  
|-
|
[[:Category:Kohara_Phage:4B6|4B6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=541 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7G8|7G8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=542 Genobase]
|
PMID:3038334
|-  
|-  
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****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="X46aa01eb0315f"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aa01eb0315f"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10843 EcoCyc:EG10843]
EcoCyc:EG10843
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0836 EchoBASE:EB0836]
EcoGene:EG10843
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3905 EcoliGenExpDB:b3905]
RegulonDB:ECK120000834
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C4855 ECOL199310CYC:C4855]
[http://www.ncbi.nlm.nih.gov/gene?term=948397 GeneID:948397]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10843 EcoGene:EG10843]
|
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=RHAS ECOO157CYC:RHAS]
EchoBASE:EB0836
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/17950 CGSC:17950]
ASAP:ABE-0012745
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0012745&formSubmitReturn=1 ASAP:ABE-0012745]
|


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{|   id="P46a71b915203d"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46a71b915203d"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


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[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rha genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:rha genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:50, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rhaS

Mnemonic

Rhamnose

Synonyms

ECK3898, b3905, JW3876, rhaC, rhaC2[1], rhaC2

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

88.28 minutes 

MG1655: 4095759..4096595
<gbrowseImage> name=NC_000913:4095759..4096595 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4077218..4078054
<gbrowseImage> name=NC_012967:4077218..4078054 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3985428..3986264
<gbrowseImage> name=NC_012759:3985428..3986264 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3538945..3538109
<gbrowseImage> name=NC_007779:3538109..3538945 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4195456..4196292
<gbrowseImage> name=NC_010473:4195456..4196292 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrhaS (Keio:JW3876)

deletion

deletion

PMID:16738554[2]

Shigen

rhaSR202A

R202A

4% of wild-type activity

seeded from UniProt:P09377

rhaSS255A

S255A

80% of wild-type activity

seeded from UniProt:P09377

rhaST256A

T256A

61% of wild-type activity

seeded from UniProt:P09377

rhaSS249G

S249G

93% of wild-type activity

seeded from UniProt:P09377

rhaSD250A

D250A

8.3% of wild-type activity

seeded from UniProt:P09377

rhaSS251G

S251G

87% of wild-type activity

seeded from UniProt:P09377

rhaSF248V

F248V

3.3% of wild-type activity

seeded from UniProt:P09377

rhaSF254A

F254A

1.2% of wild-type activity

seeded from UniProt:P09377

rhaSL201A

L201A

48% of wild-type activity

seeded from UniProt:P09377

rhaSF248A

F248A

0.9% of wild-type activity

seeded from UniProt:P09377

rhaSN252H

N252H

0.4% of wild-type activity

seeded from UniProt:P09377

rhaSN252I

N252I

0.3% of wild-type activity

seeded from UniProt:P09377

rhaSN252S

N252S

37% of wild-type activity

seeded from UniProt:P09377

rhaSH253A

H253A

48% of wild-type activity

seeded from UniProt:P09377

rhaSH253Q

H253Q

32% of wild-type activity

seeded from UniProt:P09377

rhaSN252A

N252A

31% of wild-type activity

seeded from UniProt:P09377

rhaSH205A

H205A

28% of wild-type activity

seeded from UniProt:P09377

rhaSR206A

R206A

0.1% of wild-type activity

seeded from UniProt:P09377

rhaSC246A

C246A

66% of wild-type activity

seeded from UniProt:P09377

rhaSG247A

G247A

6.2% of wild-type activity

seeded from UniProt:P09377

rhaSG247R

G247R

0.9% of wild-type activity

seeded from UniProt:P09377

xx

xx

xx

Growth Phenotype

xx


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3876

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCACCGTATTACATAGTGTGGA

Primer 2:CCTTGCAGAAAGCCATCCCGTCC

4B6

Kohara Phage

Genobase

PMID:3038334[4]

7G8

Kohara Phage

Genobase

PMID:3038334[4]

zih-35::Tn10

Linked marker

CAG18495 = CGSC7467[5]

est. P1 cotransduction: 29% [6]

pflD501::Tn10

Linked marker

CAG18477 = CGSC7470[5]

est. P1 cotransduction: 12% [6]
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10843

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10843

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000834

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948397

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0836

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012745

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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