tatE:Gene Product(s): Difference between revisions

Standard name	TatE
Synonyms	TatABCE protein translocation system subunit^[1], B0627^[2]^[1], YbeC^[2]^[1], TatE^[2]^[1] , ECK0620, JW0622, ybeC, b0627
Product description	TatE^[2]^[3]; Component of TatABCE protein export complex^[2]^[3] Protein translocase, Sec-independent; mediates export of folded and ligand-bound proteins^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006810	transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009306	protein secretion	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00236	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009306	protein secretion	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006312	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015031	protein transport	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00236	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015031	protein transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003369	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015031	protein transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006312	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015031	protein transport	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0653	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006312	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0008320	protein transmembrane transporter activity	PMID:9649434^[5]	IGI: Inferred from Genetic Interaction	EcoliWiki:tatA	F	replaced original annotation to GO:0008565 because the term was obsoleted	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9904	C	Seeded from EcoCyc (v14.0)	complete
	GO:0033281	TAT protein transport complex	PMID:9649434^[5]	IMP: Inferred from Mutant Phenotype		C	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of TatABCE protein export complex	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MGEISITKLL VVAALVVLLF GTKKLRTLGG DLGAAIKGFK KAMNDDDAAA KKGADVDLQA EKLSHKE
Length	67
Mol. Wt	7.024 kDa
pI	9.5 (calculated)
Extinction coefficient	0 (calc based on 0 Y, 0 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	4..62	PF02416 mttA/Hcf106 family		PMID:19920124^[6]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tatE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128610	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945228	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002153	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A843	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11305	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11305	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945228	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001278	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1282	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 Sargent, F et al. (1998) Overlapping functions of components of a bacterial Sec-independent protein export pathway. EMBO J. 17 3640-50 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

tatE:Gene Product(s): Difference between revisions

Latest revision as of 06:07, 29 June 2019

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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-{|   id="P46aa3a56e6a08"  class=" tableEdit GO_table_product dataTable"
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-GOA:hamap<br />GO_REF:0000020
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-IEA: Inferred from Electronic Annotation
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-HAMAP:MF_00236
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-F
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-Seeded from [[EcoCyc]] (v14.0)
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-complete
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-GO:0008565
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-GOA:interpro<br />GO_REF:0000002
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-IEA: Inferred from Electronic Annotation
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-InterPro:IPR003369
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-Seeded from [[EcoCyc]] (v14.0)
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-GOA:interpro<br />GO_REF:0000002
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-InterPro:IPR006312
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-Seeded from [[EcoCyc]] (v14.0)
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-complete
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-GO:0008565
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-PMID:9649434
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-IGI: Inferred from Genetic Interaction
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-F
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-Seeded from [[EcoCyc]] (v14.0)
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-Missing: with/from
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-GO:0008565
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-protein transporter activity
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-PMID:9649434
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-EcoliWiki:tatA
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+replaced original annotation to GO:0008565 because the term was obsoleted
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+|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20976.P46aa3a56e6a08&page=20976&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</div> || || || || || || || ||
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 !align=left {{table heading style}} |Extinction coefficient
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 View models at:
 * [http://www.proteinmodelportal.org/query/uniprot/P0A843 Protein Model Portal]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A843 PSI-PRED (P0A843)]
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A843 Genomes TO Protein (P0A843)] (GTOP)
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-[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
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-[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0002153&formSubmitReturn=1 ASAP:ABE-0002153]
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-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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-Escherichia coli str. K-12 substr. MG1655
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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-[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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+EcoGene:EG11305
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 Escherichia coli str. K-12 substr. MG1655
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+[[EchoBASE]]
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tatE:Gene Product(s): Difference between revisions

Latest revision as of 06:07, 29 June 2019

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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