recQ:Gene Product(s): Difference between revisions

Standard name	RecQ
Synonyms	ATP-dependent DNA helicase^[1], B3822^[2]^[1], RecQ^[2]^[1] , ECK3816, JW5855, b3822
Product description	ATP-dependent DNA helicase^[2]^[3] DNA helicase involved in recombination, replication, repair; ATP-dependent; monomeric^[4]
EC number (for enzymes)	3.6.1.-^[1]
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Notes

A mutant of the human homolog of RecQ, known as BLM, is responsible for Bloom syndrome. See BLM on GONUTS.

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010997	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003676	nucleic acid binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001650	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003676	nucleic acid binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002121	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046914	transition metal ion binding	PMID:2164680^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0003676	nucleic acid binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011545	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016887	ATPase activity	PMID:2164680^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0003677	DNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008094	DNA-dependent ATPase activity	PMID:2164680^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010997	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004003	ATP-dependent DNA helicase activity	PMID:2164680^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0004003	ATP-dependent DNA helicase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006293	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	PMID:2164680^[5]	IDA: Inferred from Direct Assay		C		complete
	GO:0005515	protein binding	PMID:19150358^[6]	IPI: Inferred from Physical Interaction	UniProtKB:P0AGE0	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	PMID:14665634^[7]	IDA: Inferred from Direct Assay		F		complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001650	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	PMID:15292213^[8]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011545	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	PMID:15292213^[8]	IPI: Inferred from Physical Interaction		F		Missing: with/from
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0017116	single-stranded DNA-dependent ATP-dependent DNA helicase activity	PMID:12805371^[9]	IDA: Inferred from Direct Assay		F		complete
	GO:0005622	intracellular	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002121	C	Seeded from EcoCyc (v14.0)	complete
	GO:0017117	single-stranded DNA-dependent ATP-dependent DNA helicase complex	PMID:12805371^[9]	IDA: Inferred from Direct Assay		C		complete
	GO:0006260	DNA replication	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018982	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	PMID:7868608^[10]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018982	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	PMID:7868608^[10]	IGI: Inferred from Genetic Interaction	EcoliWiki:recB\|EcoliWiki:recC\|EcoliWiki:sbcB\|EcoliWiki:sbcC	P		complete
	GO:0006281	DNA repair	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0234	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	PMID:7868608^[10]	IGI: Inferred from Genetic Interaction	EcoliWiki:recB\|EcoliWiki:recC\|EcoliWiki:sbcB\|EcoliWiki:sbcC	P		complete
	GO:0006281	DNA repair	PMID:7868608^[10]	IGI: Inferred from Genetic Interaction		P	Seeded from EcoCyc (v14.0)	Missing: with/from
	GO:0006310	DNA recombination	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004589	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	PMID:9553043^[11]	IDA: Inferred from Direct Assay		P	With RecA & SSB.	complete
	GO:0005515	protein binding	PMID:19150358^[6]	IPI: Inferred from Physical Interaction	UniProtKB:P0AGE0	F	SSB (Single-stranded DNA-binding protein)	complete
	GO:0006310	DNA recombination	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006293	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018329	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0233	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	PMID:9553043^[11]	IDA: Inferred from Direct Assay		P	Seeded from EcoCyc (v14.0)	complete
	GO:0009432	SOS response	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006293	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009432	SOS response	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0742	P	Seeded from EcoCyc (v14.0)	complete
	GO:0030894	replisome	PMID:16385024^[12]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0043140	ATP-dependent 3'-5' DNA helicase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018982	F	Seeded from EcoCyc (v14.0)	complete
	GO:0043590	bacterial nucleoid	PMID:16385024^[12]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	ssb	PMID:15690043^[13]	Experiment(s):EBI-882208, EBI-885071, EBI-889737
Protein	aceE	PMID:15690043^[13]	Experiment(s):EBI-882208
Protein	aceF	PMID:15690043^[13]	Experiment(s):EBI-882208, EBI-889737
Protein	lpdA	PMID:15690043^[13]	Experiment(s):EBI-882208, EBI-889737
Protein	topA	PMID:15690043^[13]	Experiment(s):EBI-882208, EBI-888130
Protein	rpmB	PMID:15690043^[13]	Experiment(s):EBI-889737
Protein	rpsN	PMID:15690043^[13]	Experiment(s):EBI-889737
Protein	rpmB	PMID:19402753^[14]	LCMS(ID Probability):99.6
Protein	topA	PMID:19402753^[14]	LCMS(ID Probability):98.5 MALDI(Z-score):28.250265
Protein	ssb	PMID:19402753^[14]	LCMS(ID Probability):99.6 MALDI(Z-score):35.825787
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MAQAEVLNLE SGAKQVLQET FGYQQFRPGQ EEIIDTVLSG RDCLVVMPTG GGKSLCYQIP ALLLNGLTVV VSPLISLMKD QVDQLQANGV AAACLNSTQT REQQLEVMTG CRTGQIRLLY IAPERLMLDN FLEHLAHWNP VLLAVDEAHC ISQWGHDFRP EYAALGQLRQ RFPTLPFMAL TATADDTTRQ DIVRLLGLND PLIQISSFDR PNIRYMLMEK FKPLDQLMRY VQEQRGKSGI IYCNSRAKVE DTAARLQSKG ISAAAYHAGL ENNVRADVQE KFQRDDLQIV VATVAFGMGI NKPNVRFVVH FDIPRNIESY YQETGRAGRD GLPAEAMLFY DPADMAWLRR CLEEKPQGQL QDIERHKLNA MGAFAEAQTC RRLVLLNYFG EGRQEPCGNC DICLDPPKQY DGSTDAQIAL STIGRVNQRF GMGYVVEVIR GANNQRIRDY GHDKLKVYGM GRDKSHEHWV SVIRQLIHLG LVTQNIAQHS ALQLTEAARP VLRGESSLQL AVPRIVALKP KAMQKSFGGN YDRKLFAKLR KLRKSIADES NVPPYVVFND ATLIEMAEQM PITASEMLSV NGVGMRKLER FGKPFMALIR AHVDGDDEE
Length	609
Mol. Wt	68.364 kDa
pI	7.3 (calculated)
Extinction coefficient	48,820 - 50,195 (calc based on 18 Y, 4 W, and 11 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P15043
Domain	27..192	PF00270 DEAD/DEAH box helicase		PMID:19920124^[15]
Domain	254..331	PF00271 Helicase conserved C-terminal domain		PMID:19920124^[15]
Domain	532..599	PF00570 HRDC domain		PMID:19920124^[15]
Domain	411..514	PF09382 RQC domain		PMID:19920124^[15]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=recQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:162135918	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948318	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012483	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P15043	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10833	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10833	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948318	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000824	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0826	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 Umezu, K et al. (1990) Escherichia coli RecQ protein is a DNA helicase. Proc. Natl. Acad. Sci. U.S.A. 87 5363-7 PubMed
↑ ^6.0 ^6.1 Shereda, RD et al. (2009) Identification of the SSB binding site on E. coli RecQ reveals a conserved surface for binding SSB's C terminus. J. Mol. Biol. 386 612-25 PubMed
↑ Dou, SX et al. (2004) The DNA binding properties of the Escherichia coli RecQ helicase. J. Biol. Chem. 279 6354-63 PubMed
↑ ^8.0 ^8.1 Liu, JL et al. (2004) The zinc finger motif of Escherichia coli RecQ is implicated in both DNA binding and protein folding. J. Biol. Chem. 279 42794-802 PubMed
↑ ^9.0 ^9.1 Xu, HQ et al. (2003) The Escherichia coli RecQ helicase functions as a monomer. J. Biol. Chem. 278 34925-33 PubMed
↑ ^10.0 ^10.1 ^10.2 ^10.3 Mendonca, VM et al. (1995) DNA helicases in recombination and repair: construction of a delta uvrD delta helD delta recQ mutant deficient in recombination and repair. J. Bacteriol. 177 1326-35 PubMed
↑ ^11.0 ^11.1 Harmon, FG & Kowalczykowski, SC (1998) RecQ helicase, in concert with RecA and SSB proteins, initiates and disrupts DNA recombination. Genes Dev. 12 1134-44 PubMed
↑ ^12.0 ^12.1 Sanchez, H et al. (2006) Recruitment of Bacillus subtilis RecN to DNA double-strand breaks in the absence of DNA end processing. J. Bacteriol. 188 353-60 PubMed
↑ ^13.0 ^13.1 ^13.2 ^13.3 ^13.4 ^13.5 ^13.6 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^14.0 ^14.1 ^14.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^15.0 ^15.1 ^15.2 ^15.3 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

recQ:Gene Product(s): Difference between revisions

Latest revision as of 21:08, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
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 ****************************************************************************************** -->{{Product_nomenclature_help}}
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@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-ATP-dependent DNA helicase<ref name='LIB:Riley_2006'/>, B3822<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''ATP-dependent DNA helicase<ref name='LIB:Riley_2006'/>, B3822<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3816, JW5855, b3822''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 56: / Line 56: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.- 3.6.1.-]<ref name='LIB:Riley_2006'/>
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 |}
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+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46ab061da0b94"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0044237
+GO:0000166
 |
-cellular metabolic process
+nucleotide binding
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 92: / Line 92: @@
 InterPro:IPR010997
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 101: / Line 101: @@
 |
-GO:0016787
+GO:0000166
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-hydrolase activity
+nucleotide binding
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0378
+SP_KW:KW-0547
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 120: / Line 120: @@
 |
-GO:0009432
+GO:0003676
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-SOS response
+nucleic acid binding
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-GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR006293<br />SP_KW:KW-0742
+InterPro:IPR001650
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 139: / Line 139: @@
 |
-GO:0008270
+GO:0003676
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-zinc ion binding
+nucleic acid binding
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR002857
+InterPro:IPR002121
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 158: / Line 158: @@
 |
-GO:0008026
+GO:0046914
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-ATP-dependent helicase activity
+transition metal ion binding
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-GO_REF:0000002<br />GO_REF:0000002
+PMID:2164680
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR004589<br />InterPro:IPR011545
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 177: / Line 177: @@
 |
-GO:0006974
+GO:0003676
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-response to DNA damage stimulus
+nucleic acid binding
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-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0227
+InterPro:IPR011545
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 196: / Line 196: @@
 |
-GO:0006310
+GO:0016887
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-DNA recombination
+ATPase activity
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-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+PMID:2164680
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-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR004589<br />InterPro:IPR006293<br />SP_KW:KW-0233
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 215: / Line 215: @@
 |
-GO:0006281
+GO:0003677
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-DNA repair
+DNA binding
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-GO_REF:0000004<br />GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0234<br />SP_KW:KW-0742
+SP_KW:KW-0238
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 234: / Line 234: @@
 |
-GO:0005622
+GO:0008094
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-intracellular
+DNA-dependent ATPase activity
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-GO_REF:0000002
+PMID:2164680
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR002121
 |
-C
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 253: / Line 253: @@
 |
-GO:0005524
+GO:0003824
 |
-ATP binding
+catalytic activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR001650<br />InterPro:IPR011545<br />SP_KW:KW-0067
+InterPro:IPR010997
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 272: / Line 272: @@
 |
-GO:0004386
+GO:0004003
 |
-helicase activity
+ATP-dependent DNA helicase activity
 |
-GO_REF:0000002<br />GO_REF:0000004
+PMID:2164680
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR001650<br />SP_KW:KW-0347
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 295: / Line 295: @@
 ATP-dependent DNA helicase activity
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 303: / Line 303: @@
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 310: / Line 310: @@
 |
-GO:0003824
+GO:0005737
 |
-catalytic activity
+cytoplasm
 |
-GO_REF:0000002
+PMID:2164680
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR010997
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 329: / Line 329: @@
 |
-GO:0003677
+GO:0005515
 |
-DNA binding
+protein binding
 |
-GO_REF:0000002<br />GO_REF:0000004
+PMID:19150358
 |
-IEA: Inferred from Electronic Annotation
+IPI: Inferred from Physical Interaction
 |
-InterPro:IPR002857<br />SP_KW:KW-0238
+UniProtKB:P0AGE0
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 348: / Line 348: @@
 |
-GO:0003676
+GO:0003677
 |
-nucleic acid binding
+DNA binding
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
+PMID:14665634
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR001650<br />InterPro:IPR002121<br />InterPro:IPR011545
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 367: / Line 367: @@
 |
-GO:0000166
+GO:0005524
 |
-nucleotide binding
+ATP binding
 |
-GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR010997<br />SP_KW:KW-0547
+InterPro:IPR001650
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-GO:0005737
+GO:0008270
 |
-cytoplasm
+zinc ion binding
 |
+PMID:15292213
 |
+IMP: Inferred from Mutant Phenotype
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
 |
-|
-GO:0000166
-|
-nucleotide binding
-|
-GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR010997<br />SP_KW:KW-0547
 |
 F
 |
-Seeded from EcoCyc
 |
 complete
@@ Line 424: / Line 405: @@
 |
-GO:0003676
+GO:0005524
 |
-nucleic acid binding
+ATP binding
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR001650<br />InterPro:IPR002121<br />InterPro:IPR011545
+InterPro:IPR011545
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 443: / Line 424: @@
 |
-GO:0003677
+GO:0005524
 |
-DNA binding
+ATP binding
 |
-GO_REF:0000004
+PMID:15292213
 |
-IEA: Inferred from Electronic Annotation
+IPI: Inferred from Physical Interaction
 |
-SP_KW:KW-0238
 |
 F
 |
-Seeded from EcoCyc
 |
-complete
+Missing: with/from
 |-
 |
 |
-GO:0003824
+GO:0005524
 |
-catalytic activity
+ATP binding
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR010997
+SP_KW:KW-0067
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 481: / Line 462: @@
 |
-GO:0004003
+GO:0017116
 |
-ATP-dependent DNA helicase activity
+single-stranded DNA-dependent ATP-dependent DNA helicase activity
 |
-GO_REF:0000002
+PMID:12805371
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
-|
-InterPro:IPR006293
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0004386
-|
-helicase activity
-|
-GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR001650<br />SP_KW:KW-0347
 |
 F
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0005524
-|
-ATP binding
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR001650<br />InterPro:IPR011545<br />SP_KW:KW-0067
-|
-F
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 542: / Line 485: @@
 intracellular
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 550: / Line 493: @@
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 557: / Line 500: @@
 |
-GO:0006281
+GO:0017117
 |
-DNA repair
+single-stranded DNA-dependent ATP-dependent DNA helicase complex
 |
-GO_REF:0000004<br />GO_REF:0000004
+PMID:12805371
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-SP_KW:KW-0234<br />SP_KW:KW-0742
 |
-P
+C
 |
-Seeded from EcoCyc
 |
 complete
@@ Line 576: / Line 519: @@
 |
-GO:0006310
+GO:0006260
 |
-DNA recombination
+DNA replication
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR004589<br />InterPro:IPR006293<br />SP_KW:KW-0233
+InterPro:IPR018982
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 595: / Line 538: @@
 |
-GO:0006974
+GO:0006310
 |
-response to DNA damage stimulus
+DNA recombination
 |
-GO_REF:0000004
+PMID:7868608
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-SP_KW:KW-0227
 |
 P
 |
-Seeded from EcoCyc
 |
 complete
@@ Line 614: / Line 557: @@
 |
-GO:0008026
+GO:0006281
 |
-ATP-dependent helicase activity
+DNA repair
 |
-GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR004589<br />InterPro:IPR011545
+InterPro:IPR018982
 |
-F
+P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 633: / Line 576: @@
 |
-GO:0009432
+GO:0006281
 |
-SOS response
+DNA repair
 |
-GO_REF:0000002<br />GO_REF:0000004
+PMID:7868608
 |
-IEA: Inferred from Electronic Annotation
+IGI: Inferred from Genetic Interaction
 |
-InterPro:IPR006293<br />SP_KW:KW-0742
+EcoliWiki:recB|EcoliWiki:recC|EcoliWiki:sbcB|EcoliWiki:sbcC
 |
 P
-|
-Seeded from EcoCyc
-|
-complete
-|-
 |
-|
-GO:0016787
-|
-hydrolase activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0378
-|
-F
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 671: / Line 595: @@
 |
-GO:0044237
+GO:0006281
 |
-cellular metabolic process
+DNA repair
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR010997
+SP_KW:KW-0234
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-
-|
-|
-GO:0006261
-|
-DNA-dependent DNA replication
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
 |-
 |
 |
-GO:0046914
+GO:0006974
 |
-transition metal ion binding
+response to DNA damage stimulus
 |
-PMID:2164680
+PMID:7868608
 |
-IDA: Inferred from Direct Assay
+IGI: Inferred from Genetic Interaction
 |
+EcoliWiki:recB|EcoliWiki:recC|EcoliWiki:sbcB|EcoliWiki:sbcC
 |
-F
+P
 |
@@ Line 728: / Line 633: @@
 |
-GO:0016887
+GO:0006281
 |
-ATPase activity
+DNA repair
 |
-PMID:2164680
+PMID:7868608
 |
-IDA: Inferred from Direct Assay
+IGI: Inferred from Genetic Interaction
 |
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
-complete
+Missing: with/from
 |-
 |
 |
-GO:0008094
+GO:0006310
 |
-DNA-dependent ATPase activity
+DNA recombination
 |
-PMID:2164680
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR004589
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 766: / Line 671: @@
 |
-GO:0004003
+GO:0006310
 |
-ATP-dependent DNA helicase activity
+DNA recombination
 |
-PMID:2164680
+PMID:9553043
 |
 IDA: Inferred from Direct Assay
@@ Line 776: / Line 681: @@
 |
-F
+P
 |
+With RecA & SSB.
 |
 complete
@@ Line 785: / Line 690: @@
 |
-GO:0005737
+GO:0005515
 |
-cytoplasm
+protein binding
 |
-PMID:2164680
+PMID:19150358
 |
-IDA: Inferred from Direct Assay
+IPI: Inferred from Physical Interaction
 |
+UniProtKB:P0AGE0
 |
-C
+F
 |
+SSB (Single-stranded DNA-binding protein)
 |
 complete
@@ Line 804: / Line 709: @@
 |
-GO:0003677
+GO:0006310
 |
-DNA binding
+DNA recombination
 |
-PMID:14665634
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR006293
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 823: / Line 728: @@
 |
-GO:0008270
+GO:0006310
 |
-zinc ion binding
+DNA recombination
 |
-PMID:15292213
+GOA:interpro<br />GO_REF:0000002
 |
-IMP: Inferred from Mutant Phenotype
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR018329
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 842: / Line 747: @@
 |
-GO:0005524
+GO:0006310
 |
-ATP binding
+DNA recombination
 |
-PMID:15292213
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0233
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 861: / Line 766: @@
 |
-GO:0017116
+GO:0006310
 |
-single-stranded DNA-dependent ATP-dependent DNA helicase activity
+DNA recombination
 |
-PMID:12805371
+PMID:9553043
 |
 IDA: Inferred from Direct Assay
@@ Line 871: / Line 776: @@
 |
-F
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 880: / Line 785: @@
 |
-GO:0017117
+GO:0009432
 |
-single-stranded DNA-dependent ATP-dependent DNA helicase complex
+SOS response
 |
-PMID:12805371
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR006293
 |
-C
+P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 899: / Line 804: @@
 |
-GO:0006310
+GO:0009432
 |
-DNA recombination
+SOS response
 |
-PMID:7868608
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IMP: Inferred from Mutant Phenotype
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0742
 |
 P
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 918: / Line 823: @@
 |
-GO:0006281
+GO:0030894
 |
-DNA repair
+replisome
 |
-PMID:7868608
+PMID:16385024
 |
-IGI: Inferred from Genetic Interaction
+IDA: Inferred from Direct Assay
 |
-EcoliWiki:recB|EcoliWiki:recC|EcoliWiki:sbcB|EcoliWiki:sbcC
 |
-P
+C
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 937: / Line 842: @@
 |
-GO:0006974
+GO:0043140
 |
-response to DNA damage stimulus
+ATP-dependent 3'-5' DNA helicase activity
 |
-PMID:7868608
+GOA:interpro<br />GO_REF:0000002
 |
-IGI: Inferred from Genetic Interaction
+IEA: Inferred from Electronic Annotation
 |
-EcoliWiki:recB|EcoliWiki:recC|EcoliWiki:sbcB|EcoliWiki:sbcC
+InterPro:IPR018982
 |
-P
+F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 956: / Line 861: @@
 |
-GO:0006310
+GO:0043590
 |
-DNA recombination
+bacterial nucleoid
 |
-PMID:9553043
+PMID:16385024
 |
 IDA: Inferred from Direct Assay
@@ Line 966: / Line 871: @@
 |
-P
+C
 |
-With RecA & SSB.
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-
-|
-|
+|- class="tableEdit_footer"
-GO:0005515
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.J46ab061da0b94&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-|
-protein binding
-|
-PMID:19150358
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0AGE0
-|
-F
-|
-SSB (Single-stranded DNA-binding protein)
-|
-complete
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.J46ab061da0b94&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.J46ab061da0b94-->
@@ Line 1,004: / Line 890: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ab063c93eed"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 1,084: / Line 970: @@
 |
 Experiment(s):EBI-889737<br />
+|-
+|
+Protein
+|
+rpmB
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.C46ab063c93eed&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+topA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):98.5 MALDI(Z-score):28.250265
+|-
+|
+Protein
+|
+ssb
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):35.825787
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.C46ab063c93eed&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.C46ab063c93eed-->
@@ Line 1,102: / Line 1,021: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a8901a9173b"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.F46a8901a9173b&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.F46a8901a9173b&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.F46a8901a9173b-->
@@ Line 1,127: / Line 1,046: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Z46ab063eaa3ff"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 1,161: / Line 1,084: @@
 ,820 - 50,195 (calc based on 18 Y, 4 W, and 11 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063eaa3ff&page=28252&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063eaa3ff&page=28252&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063eaa3ff-->
@@ Line 1,176: / Line 1,099: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46ab063f2c471"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P15043#section_features UniProt:P15043]
+|
 |-
 |
 Domain
 |
-- 202
+..192
+|
+[http://pfam.janelia.org/family/PF00270 PF00270  DEAD/DEAH box helicase]
 |
-[[interpro:IPR014021|Helicase ATP-binding]]
 |
-[http://www.uniprot.org/uniprot/P15043#section_features UniProt:P15043]
+PMID:19920124
 |-
 |
 Domain
 |
-- 371
+..331
+|
+[http://pfam.janelia.org/family/PF00271 PF00271  Helicase conserved C-terminal domain]
 |
-[[interpro:IPR001650|Helicase C-terminal]]
 |
-[http://www.uniprot.org/uniprot/P15043#section_features UniProt:P15043]
+PMID:19920124
 |-
 |
 Domain
 |
-- 609
+..599
 |
-[[interpro:IPR010997|HRDC]]
+[http://pfam.janelia.org/family/PF00570 PF00570  HRDC domain]
 |
-[http://www.uniprot.org/uniprot/P15043#section_features UniProt:P15043]
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063f2c471&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|-
+|
+Domain
+|
+..514
+|
+[http://pfam.janelia.org/family/PF09382 PF09382  RQC domain]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063f2c471&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.Z46ab063f2c471--></td>
@@ Line 1,219: / Line 1,170: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.Y46ab063f92fb5-->
 <!--
@@ Line 1,227: / Line 1,179: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Y46ab063f92fb5"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>recQ
+<beststructure>
-</beststructure>
+gene=recQ
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recQ&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P15043 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recQ&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P15043 PSI-PRED (P15043)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P15043 Genomes TO Protein (P15043)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Y46ab063f92fb5&page=28252&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.Y46ab063f92fb5&page=28252&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.Y46ab063f92fb5-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 1,264: / Line 1,235: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46ab06408d560"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.S46ab06408d560&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.S46ab06408d560&page=28252&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.S46ab06408d560-->
@@ Line 1,286: / Line 1,257: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ab0640f344e"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/162135918 GI:162135918]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10833-MONOMER EcoCyc:EG10833-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/YP_026263.3 GeneID:948318]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0012483
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P15043 UniProtKB/Swiss-Prot:P15043]
+|
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[[uniprot:P15043|UniProt:P15043]]
+EcoCyc:EG10833
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00270 PFAM:PF00270]
+EcoGene:EG10833
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=YP_026263 RefSeq:YP_026263]
+[http://www.ncbi.nlm.nih.gov/gene?term=948318 GeneID:948318]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P15043 ModBase:P15043]
+RegulonDB:ECK120000824
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1OYY PDB:1OYY]
+EchoBASE:EB0826
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.C46ab0640f344e&page=28252&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.C46ab0640f344e&page=28252&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.C46ab0640f344e-->
@@ Line 1,350: / Line 1,342: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46a89020d3ecc"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.R46a89020d3ecc&page=28252&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28252.R46a89020d3ecc&page=28252&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28252.R46a89020d3ecc-->
@@ Line 1,365: / Line 1,357: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006261_!_DNA-dependent DNA replication]][[Category:GO:0006281_!_DNA repair]][[Category:GO:0006310_!_DNA recombination]][[Category:Products with structures in PDB]]
+[[Category:RefGenome_Annotated_Gene]]

recQ:Gene Product(s): Difference between revisions

Latest revision as of 21:08, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

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Accessions in Other Databases

Notes

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