atpE:Gene Product(s): Difference between revisions

Standard name	AtpE
Synonyms	F0 sector of membrane-bound ATP synthase, subunit c^[1], B3737^[2]^[1], UncE^[2]^[1], PapH^[2]^[1], AtpE^[2]^[1], dicyclohexylcarbodiimide-binding protein^[2]^[1], lipid-binding protein^[2]^[1], c chain^[2]^[1] , ECK3730, JW3715, papH, uncE, b3737
Product description	ATP synthase, F0 complex, c subunit^[2]^[3]; Component of c subunit complex^[2]^[3]; ATP synthase, F0 complex^[2]^[3]; ATP synthase^[2]^[3] ATP synthase subunit c, membrane-bound, F0 sector; DCCD-binding^[4]
EC number (for enzymes)	3.6.3.14^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016021	integral to membrane	PMID:2863271^[5]	IDA: Inferred from Direct Assay		C	Seeded from Riley et al 2006 ^[1].	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
Contributes to	GO:0046961	proton-transporting ATPase activity, rotational mechanism	PMID:2863271^[5]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	PMID:6460031^[6]	IMP: Inferred from Mutant Phenotype		C		complete
	GO:0008289	lipid binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0446	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015078	hydrogen ion transmembrane transporter activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000454	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015078	hydrogen ion transmembrane transporter activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002379	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015078	hydrogen ion transmembrane transporter activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005953	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000454	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002379	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005953	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000454	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005953	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0138	C	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01396	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes
Protein	Subunits of c subunit complex	could be indirect
Protein	Subunits of ATP synthase, F0 complex	could be indirect
Protein	Subunits of ATP synthase	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source
plasma membrane	C-terminus localized to the periplasm with 2 predicted transmembrane domains	Daley et al. (2005) ^[7]
plasma membrane			From EcoCyc^[3]
Inner Membrane		PMID:9237612^[8]	EchoLocation:atpE
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MENLNMDLLY MAAAVMMGLA AIGAAIGIGI LGGKFLEGAA RQPDLIPLLR TQFFIVMGLV DAIPMIAVGL GLYVMFAVA
Length	79
Mol. Wt	8.256 kDa
pI	4.3 (calculated)
Extinction coefficient	2,980 (calc based on 2 Y, 0 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	8..77	PF00137 ATP synthase subunit C		PMID:19920124^[9]
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<motif_map/>

Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131605	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948253	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012220	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P68699	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10102	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10102	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948253	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000098	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0100	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 Aris, JP et al. (1985) The Fo subunits of the Escherichia coli F1Fo-ATP synthase are sufficient to form a functional proton pore. J. Biol. Chem. 260 11207-15 PubMed
↑ Foster, DL & Fillingame, RH (1982) Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli. J. Biol. Chem. 257 2009-15 PubMed
↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
↑ Groth, G & Walker, JE (1997) Model of the c-subunit oligomer in the membrane domain of F-ATPases. FEBS Lett. 410 117-23 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

atpE:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Y46ab00249cbd2"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-F0 sector of membrane-bound ATP synthase, subunit c<ref name='LIB:Riley_2006'/>, B3737<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dicyclohexylcarbodiimide-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lipid-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, c chain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''F0 sector of membrane-bound ATP synthase, subunit c<ref name='LIB:Riley_2006'/>, B3737<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dicyclohexylcarbodiimide-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lipid-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, c chain<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3730, JW3715, papH, uncE, b3737''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 58: / Line 58: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Y46ab00249cbd2&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Y46ab00249cbd2&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.Y46ab00249cbd2-->
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46ab00272071d"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0006811
+GO:0016021
 |
-ion transport
+integral to membrane
 |
-GO_REF:0000004
+PMID:2863271
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-SP_KW:KW-0406
 |
-P
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
 |
 complete
@@ Line 103: / Line 103: @@
 |
-GO:0008289
+GO:0005886
 |
-lipid binding
+plasma membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0446
+SP_KW:KW-0997
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
+Contributes to
 |
-GO:0006810
+GO:0046961
 |
-transport
+proton-transporting ATPase activity, rotational mechanism
 |
-GO_REF:0000004
+PMID:2863271
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
-|
-SP_KW:KW-0813
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0016820
-|
-hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR005953
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 160: / Line 141: @@
 |
-GO:0016469
+GO:0005886
 |
-proton-transporting two-sector ATPase complex
+plasma membrane
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000454<br />InterPro:IPR002379<br />InterPro:IPR005953
+SP_KW:KW-1003
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 179: / Line 160: @@
 |
-GO:0016021
+GO:0045263
 |
-integral to membrane
+proton-transporting ATP synthase complex, coupling factor F(o)
 |
-GO_REF:0000002<br />GO_REF:0000004
+PMID:6460031
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-InterPro:IPR005953<br />SP_KW:KW-0812
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 198: / Line 179: @@
 |
-GO:0015078
+GO:0008289
 |
-hydrogen ion transmembrane transporter activity
+lipid binding
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0375
+SP_KW:KW-0446
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 217: / Line 198: @@
 |
-GO:0015986
+GO:0015078
 |
-ATP synthesis coupled proton transport
+hydrogen ion transmembrane transporter activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000454<br />InterPro:IPR002379<br />InterPro:IPR005953
+InterPro:IPR000454
 |
-P
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 236: / Line 217: @@
 |
-GO:0015992
+GO:0015078
 |
-proton transport
+hydrogen ion transmembrane transporter activity
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0375
+InterPro:IPR002379
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 255: / Line 236: @@
 |
-GO:0016020
+GO:0015078
 |
-membrane
+hydrogen ion transmembrane transporter activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000454<br />InterPro:IPR002379<br />SP_KW:KW-0397<br />SP_KW:KW-0472
+InterPro:IPR005953
 |
-C
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 274: / Line 255: @@
 |
-GO:0045263
+GO:0015986
 |
-proton-transporting ATP synthase complex, coupling factor F(o)
+ATP synthesis coupled proton transport
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0138
+InterPro:IPR000454
 |
-C
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 293: / Line 274: @@
 |
-GO:0046933
+GO:0015986
 |
-hydrogen ion transporting ATP synthase activity, rotational mechanism
+ATP synthesis coupled proton transport
 |
-GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000454<br />InterPro:IPR002379
+InterPro:IPR002379
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 312: / Line 293: @@
 |
-GO:0046961
+GO:0015986
 |
-hydrogen ion transporting ATPase activity, rotational mechanism
+ATP synthesis coupled proton transport
 |
-GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000454<br />InterPro:IPR002379
+InterPro:IPR005953
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 331: / Line 312: @@
 |
 GO:0016021
 |
 integral to membrane
 |
-PMID:2863271
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0812
 |
 C
 |
-Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 350: / Line 331: @@
 |
-GO:0005886
+GO:0016021
 |
-plasma membrane
+integral to membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+SP_SL:SL-9909
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 369: / Line 350: @@
 |
-GO:0033177
+GO:0045263
 |
-proton-transporting two-sector ATPase complex, proton-transporting domain
+proton-transporting ATP synthase complex, coupling factor F(o)
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR002379
+InterPro:IPR000454
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 388: / Line 369: @@
 |
-GO:0005886
+GO:0045263
 |
-plasma membrane
+proton-transporting ATP synthase complex, coupling factor F(o)
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+InterPro:IPR005953
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0006810
-|
-transport
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0813
-|
-P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0015986
-|
-ATP synthesis coupled proton transport
-|
-PMID:2863271
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-complete
-|-
-|
-Contributes to
-|
-GO:0046961
-|
-hydrogen ion transporting ATPase activity, rotational mechanism
-|
-PMID:2863271
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-F
-|
 |
 complete
@@ Line 468: / Line 392: @@
 proton-transporting ATP synthase complex, coupling factor F(o)
 |
-PMID:6460031
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IMP: Inferred from Mutant Phenotype
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0138
 |
 C
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 483: / Line 407: @@
 |
-GO:0006811
+GO:0046933
 |
-ion transport
+hydrogen ion transporting ATP synthase activity, rotational mechanism
 |
-GO_REF:0000004
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0406
+HAMAP:MF_01396
 |
-P
+F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Z46ab00272071d&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Z46ab00272071d&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.Z46ab00272071d-->
@@ Line 512: / Line 436: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ab0034e902d"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 549: / Line 473: @@
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.C46ab0034e902d&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.C46ab0034e902d&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.C46ab0034e902d-->
@@ Line 566: / Line 490: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46ab003764ef8"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
@@ Line 576: / Line 500: @@
 |
 Daley et al. (2005) <ref name=PMID:15919996/>
+|
 |
@@ Line 586: / Line 512: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
+|-
+|
+Inner Membrane
+|
+|
+PMID:9237612
+|
+[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB0100 EchoLocation:atpE]
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.D46ab003764ef8&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.D46ab003764ef8&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.D46ab003764ef8-->
@@ Line 609: / Line 548: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="S46ab00392f0b5"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 624: / Line 567: @@
 !align=left {{table heading style}} |Mol. Wt
 ||
-.26 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.256 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
-.69<ref name='LIB:EcoCyc10.6'/>
+.3 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-(calc based on 2 Y, 0 W, and 0 C residues)
+,980 (calc based on 2 Y, 0 W, and 0 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.S46ab00392f0b5&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.S46ab00392f0b5&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.S46ab00392f0b5-->
@@ Line 652: / Line 595: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ab0039a49ca"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-
-|
-Modification Site
-|
-|
-N-formylmethionine
-|
-[http://www.uniprot.org/uniprot/P68699#section_features UniProt:P68699]
 |-
 |
 Domain
 |
-- 32
+..77
 |
-Predicted membrane-spanning helix.
+[http://pfam.janelia.org/family/PF00137 PF00137  ATP synthase subunit C]
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-
 |
-Domain
+PMID:19920124
-|
-- 75
-|
-Predicted membrane-spanning helix.
-|
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.N46ab0039a49ca&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.N46ab0039a49ca&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.N46ab0039a49ca-->
@@ Line 698: / Line 625: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.Z46ab003a125bd-->
 <!--
@@ Line 706: / Line 634: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Z46ab003a125bd"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>atpE
+<beststructure>
-</beststructure>
+gene=atpE
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=atpE&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/A5A609 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=atpE&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P68699 PSI-PRED (P68699)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P68699 Genomes TO Protein (P68699)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Z46ab003a125bd&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.Z46ab003a125bd&page=28066&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.Z46ab003a125bd-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 743: / Line 690: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ab003ed11a6"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.N46ab003ed11a6&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.N46ab003ed11a6&page=28066&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.N46ab003ed11a6-->
@@ Line 765: / Line 712: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46ab003f41e29"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131605 GI:16131605]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=ATPE-MONOMER EcoCyc:ATPE-MONOMER]
+Escherichia coli str. K-12 substr. MG1655
+|-
 |
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418193.1 GeneID:948253]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0012220
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P68699 UniProtKB/Swiss-Prot:P68699]
+|
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[[uniprot:P68699|UniProt:P68699]]
+EcoCyc:EG10102
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00137 PFAM:PF00137]
+EcoGene:EG10102
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418193 RefSeq:NP_418193]
+[http://www.ncbi.nlm.nih.gov/gene?term=948253 GeneID:948253]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P68699 ModBase:P68699]
+RegulonDB:ECK120000098
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1A91 PDB:1A91]
+EchoBASE:EB0100
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.V46ab003f41e29&page=28066&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.V46ab003f41e29&page=28066&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.V46ab003f41e29-->
@@ Line 829: / Line 797: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a88b6ad9b90"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.W46a88b6ad9b90&page=28066&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28066.W46a88b6ad9b90&page=28066&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28066.W46a88b6ad9b90-->
@@ Line 844: / Line 812: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0016021_!_integral to membrane]][[Category:GO:0015986_!_ATP synthesis coupled proton transport]][[Category:GO:0016471_!_vacuolar proton-transporting V-type ATPase complex]][[Category:Complex:c subunit complex]][[Category:Complex:ATP synthase, F0 complex]][[Category:Complex:ATP synthase]][[Category:Location:plasma membrane]][[Category:Products with structures in PDB]]

atpE:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

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