fbaA:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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fructose-bisphosphate aldolase, class II<ref name='LIB:Riley_2006'/>, B2925<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fda<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ald<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FbaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fba<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''fructose-bisphosphate aldolase, class II<ref name='LIB:Riley_2006'/>, B2925<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fda<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ald<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FbaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fba<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ald, ECK2921, fba, fda, JW2892, b2925''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.  
Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.  
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Missing: evidence  
Missing: evidence, reference
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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Experiment(s):EBI-879773<br />  
Experiment(s):EBI-879773<br />  
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Protein
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fldA
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PMID:19402753
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MALDI(Z-score):17.053160


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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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!align=left {{table heading style}} |Name
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!|Type!!Residues!!Description!!Notes!!References
!|Type!!Residues!!Description!!Notes!!References
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[http://pfam.janelia.org/family/PF01116 PF01116  Fructose-bisphosphate aldolase class-II]
[http://pfam.janelia.org/family/PF01116 PF01116  Fructose-bisphosphate aldolase class-II]
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[http://pfam.janelia.org/protein/P0AB71 Pfam:P0AB71]
 
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PMID:19920124


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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P0AB71 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AB71 PSI-PRED (P0AB71)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AB71 Genomes TO Protein (P0AB71)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/16130826 GI:16130826]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/NP_417400.1 GeneID:947415]
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Escherichia coli str. K-12 substr. MG1655
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[[ASAP]]
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ASAP:ABE-0009600
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=FRUCTBISALD-CLASSII-MONOMER EcoCyc:FRUCTBISALD-CLASSII-MONOMER]
[http://www.uniprot.org/uniprot/P0AB71 UniProtKB/Swiss-Prot:P0AB71]
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Escherichia coli str. K-12 substr. MG1655
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[[EcoCyc]]
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EcoCyc:EG10282
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10282
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[[uniprot:P0AB71|UniProt:P0AB71]]
[http://www.ncbi.nlm.nih.gov/gene?term=947415 GeneID:947415]
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Escherichia coli str. K-12 substr. MG1655
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
[[RegulonDB]]
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[http://pfam.sanger.ac.uk/family?acc=PF01116 PFAM:PF01116]
RegulonDB:ECK120000276
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417400 RefSeq:NP_417400]
EchoBASE:EB0278
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]
[[Category:Proteins]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0016052_!_carbohydrate catabolic process]][[Category:Complex:fructose bisphosphate aldolase class II]][[Category:Products with structures in PDB]]
[[Category:Pfam:PF01116_!_Fructose-bisphosphate aldolase class-II]]

Latest revision as of 20:57, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FbaA

Synonyms

fructose-bisphosphate aldolase, class II[1], B2925[2][1], Fda[2][1], Ald[2][1], FbaA[2][1], Fba[2][1] , ald, ECK2921, fba, fda, JW2892, b2925

Product description

fructose bisphosphate aldolase[2][3];

Component of fructose bisphosphate aldolase class II[2][3]

Fructose-bisphosphate aldolase, class II; binds Zn(II); homdomeric[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004332

fructose-bisphosphate aldolase activity

PMID:16562136[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0006094

gluconeogenesis

P

Missing: evidence, reference

GO:0004332

fructose-bisphosphate aldolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000771

F

Seeded from EcoCyc (v14.0)

complete

GO:0004332

fructose-bisphosphate aldolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006411

F

Seeded from EcoCyc (v14.0)

complete

GO:0004332

fructose-bisphosphate aldolase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.2.13

F

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000771

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006411

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0004332

fructose-bisphosphate aldolase activity

PMID:16562136[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

PMID:11985624[6]

IDA: Inferred from Direct Assay

F

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000771

F

Seeded from EcoCyc (v14.0)

complete

GO:0004332

fructose-bisphosphate aldolase activity

PMID:16562136[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

PMID:8436219[7]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of fructose bisphosphate aldolase class II

could be indirect

Protein

dnaK

PMID:15690043[8]

Experiment(s):EBI-879773, EBI-884401

Protein

fldA

PMID:15690043[8]

Experiment(s):EBI-879773

Protein

hsdR

PMID:15690043[8]

Experiment(s):EBI-879773

Protein

rpsB

PMID:15690043[8]

Experiment(s):EBI-879773

Protein

yfeR

PMID:15690043[8]

Experiment(s):EBI-879773

Protein

fldA

PMID:19402753[9]

MALDI(Z-score):17.053160

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:2649077[10]

EchoLocation:fbaA


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSKIFDFVKP GVITGDDVQK VFQVAKENNF ALPAVNCVGT DSINAVLETA AKVKAPVIVQ
FSNGGASFIA GKGVKSDVPQ GAAILGAISG AHHVHQMAEH YGVPVILHTD HCAKKLLPWI
DGLLDAGEKH FAATGKPLFS SHMIDLSEES LQENIEICSK YLERMSKIGM TLEIELGCTG
GEEDGVDNSH MDASALYTQP EDVDYAYTEL SKISPRFTIA ASFGNVHGVY KPGNVVLTPT
ILRDSQEYVS KKHNLPHNSL NFVFHGGSGS TAQEIKDSVS YGVVKMNIDT DTQWATWEGV
LNYYKANEAY LQGQLGNPKG EDQPNKKYYD PRVWLRAGQT SMIARLEKAF QELNAIDVL
Length

359

Mol. Wt

39.146 kDa

pI

5.8 (calculated)

Extinction coefficient

41,370 - 41,870 (calc based on 13 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AB71

Domain

14..359

PF01116 Fructose-bisphosphate aldolase class-II

PMID:19920124[11]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fbaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130826

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947415

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009600

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AB71

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10282

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10282

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947415

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000276

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0278

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Böck, A & Neidhardt, FC (1966) Isolation of a Mutant of Escherichia coli with a Temperature-sensitive Fructose-1,6-Diphosphate Aldolase Activity. J. Bacteriol. 92 464-9 PubMed
  6. ↑ Katayama, A et al. (2002) Systematic search for zinc-binding proteins in Escherichia coli. Eur. J. Biochem. 269 2403-13 PubMed
  7. ↑ Berry, A & Marshall, KE (1993) Identification of zinc-binding ligands in the class II fructose-1,6-bisphosphate aldolase of Escherichia coli. FEBS Lett. 318 11-6 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  9. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  10. ↑ Alefounder, PR et al. (1989) Cloning, sequence analysis and over-expression of the gene for the class II fructose 1,6-bisphosphate aldolase of Escherichia coli. Biochem. J. 257 529-34 PubMed
  11. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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