recO:Gene Product(s): Difference between revisions

Standard name	RecO
Synonyms	gap repair protein^[1], B2565^[2]^[1], RecO^[2]^[1] , ECK2563, JW2549, b2565
Product description	protein interacts with RecR and possibly RecF proteins^[2]^[3]; Component of RecFOR complex^[2]^[3] Conjugational recombination and repair; DNA-binding protein; RecA-like strand assimilation^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006281	DNA repair	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00201	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003717	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0234	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00201	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003717	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006310	DNA recombination	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0233	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0227	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of RecFOR complex	could be indirect
Protein	rpsE		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	slt		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	era		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	aegA		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	secD		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	rplO		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	rpsC		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	rpsG		PMID:16606699^[5]	Experiment(s):EBI-1143287
Protein	rpsJ		PMID:19402753^[6]	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MEGWQRAFVL HSRPWSETSL MLDVFTEESG RVRLVAKGAR SKRSTLKGAL QPFTPLLLRF GGRGEVKTLR SAEAVSLALP LSGITLYSGL YINELLSRVL EYETRFSELF FDYLHCIQSL AGVTGTPEPA LRRFELALLG HLGYGVNFTH CAGSGEPVDD TMTYRYREEK GFIASVVIDN KTFTGRQLKA LNAREFPDAD TLRAAKRFTR MALKPYLGGK PLKSRELFRQ FMPKRTVKTH YE
Length	242
Mol. Wt	27.391 kDa
pI	10.2 (calculated)
Extinction coefficient	24,410 - 24,660 (calc based on 9 Y, 2 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	80..226	PF02565 Recombination protein O C terminal	PMID:19920124^[7]
Domain	1..78	PF11967 Recombination protein O N terminal	PMID:19920124^[7]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=recO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130490	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947038	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008438	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A7H3	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10832	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10832	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947038	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000823	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0825	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 ^5.5 ^5.6 ^5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^7.0 ^7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

recO:Gene Product(s): Difference between revisions

Latest revision as of 20:53, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="N46aab0147bc90"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-gap repair protein<ref name='LIB:Riley_2006'/>, B2565<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''gap repair protein<ref name='LIB:Riley_2006'/>, B2565<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2563, JW2549, b2565''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 52: / Line 52: @@
 Component of [[:Category:Complex:RecFOR complex|RecFOR complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Conjugational recombination and repair; DNA-binding protein; RecA-like strand assimilation<ref name='LIB:EcoGene'/>
 |-
 !align=left {{table heading style}} |EC number (for enzymes)
 ||
-*
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.N46aab0147bc90&page=25423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.N46aab0147bc90&page=25423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.N46aab0147bc90-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 69: / Line 70: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6-->
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6-->
 <!--
 ******************************************************************************************
@@ Line 76: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46aab015e6df6"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0006281
+|
+DNA repair
+|
+GOA:hamap<br />GO_REF:0000020
+|
+IEA: Inferred from Electronic Annotation
+|
+HAMAP:MF_00201
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006281
+|
+DNA repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR003717
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006281
+|
+DNA repair
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0234
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
 |-
 |
 |
-[[Category:GO:0006974_!_response_to_DNA_damage_stimulus]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006974_!_response_to_DNA_damage_stimulus GO:0006974]
+GO:0006310
 |
-response to DNA damage stimulus
+DNA recombination
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.uniprot.org/keywords/KW-0227 SP_KW:KW-0227]
+HAMAP:MF_00201
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 102: / Line 160: @@
 |
-[[Category:GO:0006310_!_DNA_recombination]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006310_!_DNA_recombination GO:0006310]
+GO:0006310
 |
 DNA recombination
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003717 InterPro:IPR003717]<br />[http://www.uniprot.org/keywords/KW-0233 SP_KW:KW-0233]<br />[http://ca.expasy.org/unirule/MF_00201 HAMAP:MF_00201]
+InterPro:IPR003717
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 121: / Line 179: @@
 |
-[[Category:GO:0006281_!_DNA_repair]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006281_!_DNA_repair GO:0006281]
+GO:0006310
 |
-DNA repair
+DNA recombination
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003717 InterPro:IPR003717]<br />[http://www.uniprot.org/keywords/KW-0234 SP_KW:KW-0234]<br />[http://ca.expasy.org/unirule/MF_00201 HAMAP:MF_00201]
+SP_KW:KW-0233
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
+GO:0006974
 |
-cytoplasm
+response to DNA damage stimulus
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0227
 |
-C
+P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6-->
@@ Line 169: / Line 227: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aab021e19e0"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 176: / Line 234: @@
 Protein
 |
-[http://www.uniprot.org/uniprot/Subuni Subuni]ts of [[:Category:Complex:RecFOR complex|RecFOR complex]]
+Subunits of [[:Category:Complex:RecFOR complex|RecFOR complex]]
 |
 could be indirect
@@ Line 187: / Line 245: @@
 Protein
 |
-[[rpsE:Gene_Product(s)|rpsE]]<br />
+rpsE<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
+|-
+|
+Protein
+|
+slt<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[slt:Gene_Product(s)|slt]]<br />
+era<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[era:Gene_Product(s)|era]]<br />
+aegA<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[aegA:Gene_Product(s)|aegA]]<br />
+secD<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[secD:Gene_Product(s)|secD]]<br />
+rplO<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[rplO:Gene_Product(s)|rplO]]<br />
+rpsC<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[rpsC:Gene_Product(s)|rpsC]]<br />
+rpsG<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1143287<br />
 |-
 |
 Protein
 |
-[[rpsG:Gene_Product(s)|rpsG]]<br />
+rpsJ
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />
+PMID:19402753
+|
+LCMS(ID Probability):99.6
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.E46aab021e19e0&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.E46aab021e19e0-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 281: / Line 358: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
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 |- {{table heading style}}
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+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.S46a848572771e-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 306: / Line 383: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Y46aab02445efe"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 316: / Line 397: @@
 AGVTGTPEPA LRRFELALLG HLGYGVNFTH CAGSGEPVDD TMTYRYREEK GFIASVVIDN
 KTFTGRQLKA LNAREFPDAD TLRAAKRFTR MALKPYLGGK PLKSRELFRQ FMPKRTVKTH YE</pre>
+|-
+!align=left {{table heading style}} |Length
+||
 |-
 !align=left {{table heading style}} |Mol. Wt
 ||
-.39 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.391 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
+.2 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 24660 (calc based on 9 Y, 2 W, and 2 C residues)
+,410 - 24,660 (calc based on 9 Y, 2 W, and 2 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.Y46aab02445efe&page=25423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.Y46aab02445efe-->
-{{Product_physical_properties_help}}
-<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf-->
 <!--
 ******************************************************************************************
@@ Line 343: / Line 429: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46aab024b4bbf"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Domain
+|
+..226
+|
+[http://pfam.janelia.org/family/PF02565 PF02565  Recombination protein O C terminal]
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|-
+|
+Domain
+|
+..78
+|
+[http://pfam.janelia.org/family/PF11967 PF11967  Recombination protein O N terminal]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.25423.H46aab024b4bbf--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.W46a84858bf07d-->
 <!--
@@ Line 361: / Line 476: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="W46a84858bf07d"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>recO
+<beststructure>
-</beststructure>
+gene=recO
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recO&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A7H3 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recO&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A7H3 PSI-PRED (P0A7H3)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A7H3 Genomes TO Protein (P0A7H3)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.W46a84858bf07d&page=25423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.W46a84858bf07d&page=25423&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.W46a84858bf07d-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 398: / Line 532: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aab0257d1b9"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.I46aab0257d1b9&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.I46aab0257d1b9&page=25423&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.I46aab0257d1b9-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 420: / Line 554: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aab025db195"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10832-MONOMER EcoCyc:EG10832-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/16130490 GI:16130490]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_417060.1 GeneID:947038]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0008438
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A7H3 UniProtKB/Swiss-Prot:P0A7H3]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10832
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10832
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P0A7H3|UniProt:P0A7H3]]
+[http://www.ncbi.nlm.nih.gov/gene?term=947038 GeneID:947038]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF02565 PFAM:PF02565]
+RegulonDB:ECK120000823
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417060 RefSeq:NP_417060]
+EchoBASE:EB0825
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.Q46aab025db195&page=25423&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.Q46aab025db195&page=25423&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.Q46aab025db195-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 470: / Line 639: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a8485b7bc97"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.G46a8485b7bc97&page=25423&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25423.G46a8485b7bc97&page=25423&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25423.G46a8485b7bc97-->
-{{Links_help}}
@@ Line 486: / Line 655: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006281_!_DNA repair]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006310_!_DNA recombination]][[Category:Complex:RecFOR complex]]

recO:Gene Product(s): Difference between revisions

Latest revision as of 20:53, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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