insE-5:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
IS3 element protein<ref name='LIB:Riley_2006'/>, DLP12 prophage; IS3 element protein InsE<ref name='LIB:Riley_2006'/>, IS3 element protein InsE<ref name='LIB:Riley_2006'/>, B0373<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0298<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2088<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1027<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''IS3 element protein<ref name='LIB:Riley_2006'/>, DLP12 prophage; IS3 element protein InsE<ref name='LIB:Riley_2006'/>, IS3 element protein InsE<ref name='LIB:Riley_2006'/>, B0373<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0298<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2088<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1027<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0298, b0298, b0373, b0540, b1027, b2088''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
 
|
GO:0003677
|
DNA binding
|
GO_REF:0000002<br />GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002514<br />SP_KW:KW-0238
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
 
|
GO:0004803
|
transposase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002514
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
 
|
GO:0006310
|
DNA recombination
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0233
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
 
|
GO:0006313
|
transposition, DNA-mediated
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GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002514<br />SP_KW:KW-0814<br />SP_KW:KW-0815
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
 
|
GO:0032196
|
transposition
|
GO_REF:0000004<br />GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0814<br />SP_KW:KW-0815
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
 
|
GO:0003677
|
DNA binding
|
GO_REF:0000002<br />GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002514<br />SP_KW:KW-0238
|
F
|
Seeded from EcoCyc
|
complete
|-
|
 
|
GO:0004803
|
transposase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002514
|
F
|
Seeded from EcoCyc
|
complete
|-
|
 
|
GO:0006310
|
DNA recombination
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0233
|
P
|
Seeded from EcoCyc
|
complete
|-
|


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GO:0006313
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transposition, DNA-mediated
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
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InterPro:IPR002514
|
P
|
Seeded from EcoCyc
|
complete
|-
|
 
|
GO:0032196
|
transposition
|
GO_REF:0000004<br />GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0814<br />SP_KW:KW-0815
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P
|
Seeded from EcoCyc
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complete
 
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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!|Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Name
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!align=left {{table heading style}} |Length
!align=left {{table heading style}} |Length
||
||
0
 
|-
|-
!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
11.91 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 
|-
|-
!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
||
||
 
|-
|-
!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
0 (calc based on 0 Y, 0 W, and 0 C residues)


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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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|-
!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>insE-5
<beststructure>
562</beststructure>
gene=insE-5
 
taxon=562,83333
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=insE-5&sub=keywordSearc EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P0CF66 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=insE-5&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****        -->
</td><tr><table><!--Structure_notes--></protect>
===Notes===
===Notes===


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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524700 GI:226524700]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_414832.2 GeneID:944952]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524701 GI:226524701]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_414907.2 GeneID:946900]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6534-MONOMER EcoCyc:G6534-MONOMER]
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
|
[http://www.ncbi.nlm.nih.gov/protein/226524703 GI:226524703]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_415072.2 GeneID:945759]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524706 GI:226524706]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_415546.2 GeneID:945584]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524731 GI:226524731]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_416592.2 GeneID:946616]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001028&formSubmitReturn=1 ASAP:ABE-0001028]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6168 ECOCYC:G6168]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG40005 EcoGene:EG40005]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944952 GeneID:944952]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001279&formSubmitReturn=1 ASAP:ABE-0001279]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6224 ECOCYC:G6224]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946900 GeneID:946900]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001855&formSubmitReturn=1 ASAP:ABE-0001855]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6296 ECOCYC:G6296]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945759 GeneID:945759]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003477&formSubmitReturn=1 ASAP:ABE-0003477]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6534 ECOCYC:G6534]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945584 GeneID:945584]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
|
[[uniprot:P0ADH3|UniProt:P0ADH3]]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006917&formSubmitReturn=1 ASAP:ABE-0006917]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://pfam.sanger.ac.uk/family?acc=PF01527 PFAM:PF01527]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7125 ECOCYC:G7125]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416592 RefSeq:NP_416592]
[http://www.ncbi.nlm.nih.gov/gene?term=946616 GeneID:946616]
|
|
Escherichia coli str. K-12 substr. MG1655


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:GO:0006313_!_transposition, DNA-mediated]]
[[Category:Proteins]]

Latest revision as of 15:50, 5 October 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InsE

Synonyms

IS3 element protein[1], DLP12 prophage; IS3 element protein InsE[1], IS3 element protein InsE[1], B0373[2][1], B0298[2][1], B2088[2][1], B0540[2][1], B1027[2][1], InsE-1[2][1], InsE-2[2][1], InsE-3[2][1], InsE-4[2][1], InsE-5[2][1] , ECK0298, b0298, b0373, b0540, b1027, b2088

Product description

IS3 element protein InsE[2][3]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

 




Length






Mol. Wt






pI






Extinction coefficient












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Domains/Motifs/Modification Sites





See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.







Type
Residues
Description
Notes
References





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<motif_map/>










Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.








Structures



<beststructure>
gene=insE-5
taxon=562,83333
</beststructure>






Models



View models at:








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Structure figures




Notes


Gene Product Resources


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 See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.







Resource type
Source
Notes/Reference





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Notes


Accessions in Other Databases


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See Help:Gene_accessions for help with entering information into the Gene Accessions table.







Database
Accession
Notes






NCBI (Protein) (EcoliWiki Page)





GI:226524700





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GeneID:944952





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GI:226524701





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GeneID:946900





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GI:226524703





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GeneID:945759





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GI:226524706





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GeneID:945584





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GI:226524731





Escherichia coli str. K-12 substr. MG1655 








NCBI (Protein) (EcoliWiki Page)





GeneID:946616





Escherichia coli str. K-12 substr. MG1655 








ASAP (EcoliWiki Page)





ASAP:ABE-0001028





Escherichia coli str. K-12 substr. MG1655 








EcoCyc (EcoliWiki Page)





ECOCYC:G6168





Escherichia coli str. K-12 substr. MG1655 








EcoGene (EcoliWiki Page)





EcoGene:EG40005





Escherichia coli str. K-12 substr. MG1655 








NCBI (Gene) (EcoliWiki Page)





GeneID:944952





Escherichia coli str. K-12 substr. MG1655 








ASAP (EcoliWiki Page)





ASAP:ABE-0001279





Escherichia coli str. K-12 substr. MG1655 








EcoCyc (EcoliWiki Page)





ECOCYC:G6224





Escherichia coli str. K-12 substr. MG1655 








NCBI (Gene) (EcoliWiki Page)





GeneID:946900





Escherichia coli str. K-12 substr. MG1655 








ASAP (EcoliWiki Page)





ASAP:ABE-0001855





Escherichia coli str. K-12 substr. MG1655 








EcoCyc (EcoliWiki Page)





ECOCYC:G6296





Escherichia coli str. K-12 substr. MG1655 








NCBI (Gene) (EcoliWiki Page)





GeneID:945759





Escherichia coli str. K-12 substr. MG1655 








ASAP (EcoliWiki Page)





ASAP:ABE-0003477





Escherichia coli str. K-12 substr. MG1655 








EcoCyc (EcoliWiki Page)





ECOCYC:G6534





Escherichia coli str. K-12 substr. MG1655 








NCBI (Gene) (EcoliWiki Page)





GeneID:945584





Escherichia coli str. K-12 substr. MG1655 








ASAP (EcoliWiki Page)





ASAP:ABE-0006917





Escherichia coli str. K-12 substr. MG1655 








EcoCyc (EcoliWiki Page)





ECOCYC:G7125





Escherichia coli str. K-12 substr. MG1655 








NCBI (Gene) (EcoliWiki Page)





GeneID:946616





Escherichia coli str. K-12 substr. MG1655 







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Notes


Links


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References


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See Help:References for how to manage references in EcoliWiki.



    

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)  

    2. 

  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7  

    3. 

  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7  

    4. 



Categories


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