insE-5:Gene Product(s): Difference between revisions
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|{{Sub}}[[#Localization |Localization]] | |{{Sub}}[[#Localization |Localization]] | ||
|{{Sub}}[[#Sequence|Sequence]] | |{{Sub}}[[#Sequence|Sequence]] | ||
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]] | |||
|{{Sub}}[[#Structure|Structure]] | |{{Sub}}[[#Structure|Structure]] | ||
|{{Sub}}[[#Gene Product Resources|Resources]] | |{{Sub}}[[#Gene Product Resources|Resources]] | ||
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!{{table heading style}} |Standard name | !align=left {{table heading style}} |Standard name | ||
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InsE | InsE | ||
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!{{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
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IS3 element protein | ''IS3 element protein<ref name='LIB:Riley_2006'/>, DLP12 prophage; IS3 element protein InsE<ref name='LIB:Riley_2006'/>, IS3 element protein InsE<ref name='LIB:Riley_2006'/>, B0373<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0298<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2088<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1027<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0298, b0298, b0373, b0540, b1027, b2088'' | ||
|- | |- | ||
!{{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
| | || | ||
IS3 element protein InsE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | IS3 element protein InsE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
|- | |- | ||
!{{table heading style}} |EC number (for enzymes) | !align=left {{table heading style}} |EC number (for enzymes) | ||
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===Notes=== | ===Notes=== | ||
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{{BacktoTop}} | {{BacktoTop}} | ||
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<big>'''Gene Ontology'''</big> | <big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20203.Q46aa2784a3377--> | ||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46aa2784a3377" class=" tableEdit GO_table_product dataTable" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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<span id="Interactions"></span><big>'''Interactions'''</big> | <span id="Interactions"></span><big>'''Interactions'''</big> | ||
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!Partner Type!!Partner!!Notes | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
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===Notes=== | ===Notes=== | ||
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!Compartment!!Description!!Evidence!!Notes | !|Compartment!!Description!!Evidence!!Reference/Source!!Notes | ||
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!align=left {{table heading style}} |Name | |||
|| | |||
|- | |- | ||
!{{table heading style}} |Sequence | !align=left {{table heading style}} |Sequence | ||
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[http://biocyc.org/ECOLI/sequence-aa?object=G6534-MONOMER at EcoCyc] | [http://biocyc.org/ECOLI/sequence-aa?object=G6534-MONOMER at EcoCyc] | ||
<pre></pre> | <pre></pre> | ||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Length | ||
| | || | ||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Mol. Wt | ||
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|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |pI | ||
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| | !align=left {{table heading style}} |Extinction coefficient | ||
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<big>'''Domains/Motifs/Modification Sites'''</big> | |||
<!--box uid=421aa90e079fa326b6494f812ad13e79.20203.K46aa27897753d--> | <span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table> | ||
<tr align="left" valign="top"> | |||
<td><!--box uid=421aa90e079fa326b6494f812ad13e79.20203.K46aa27897753d--> | |||
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!Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes!!References | ||
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<td> | |||
<!-- motifs column 2--> | |||
<motif_map/> | |||
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<span id= | <table><tr valign='top'><td> | ||
<span id='Structure'></span><big>'''Structure'''</big><br /> | |||
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{|class = | {| id="Q46a7b8b7d750f" class=" tableEdit Product_structure_table" | ||
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|-class= | !align=left {{table heading style}} |Structures | ||
|[{{SERVER}} | || | ||
<beststructure> | |||
gene=insE-5 | |||
taxon=562,83333 | |||
</beststructure> | |||
|- | |||
!align=left {{table heading style}} |Models | |||
|| | |||
View models at: | |||
* [http://www.proteinmodelportal.org/query/uniprot/P0CF66 Protein Model Portal] | |||
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED] | |||
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | |||
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<!--Structure_notes--></protect> | </td><td></protect> | ||
==== Structure figures ==== | |||
<protect><!-- ***** PLEASE DO NOT EDIT BELOW THIS LINE ***** --> | |||
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===Notes=== | ===Notes=== | ||
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===Notes=== | ===Notes=== | ||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46aa278a604b4" class=" tableEdit Gene_accessions_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |- | ||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/226524700 GI:226524700] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_414832.2 GeneID:944952] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/226524701 GI:226524701] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_414907.2 GeneID:946900] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/226524703 GI:226524703] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_415072.2 GeneID:945759] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/226524706 GI:226524706] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_415546.2 GeneID:945584] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/226524731 GI:226524731] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_416592.2 GeneID:946616] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]]) | |||
| | |||
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001028&formSubmitReturn=1 ASAP:ABE-0001028] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
| | |||
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6168 ECOCYC:G6168] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | |||
| | |||
[http://ecogene.org/geneinfo.php?eg_id=EG40005 EcoGene:EG40005] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene?term=944952 GeneID:944952] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]]) | |||
| | |||
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001279&formSubmitReturn=1 ASAP:ABE-0001279] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
| | |||
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6224 ECOCYC:G6224] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene?term=946900 GeneID:946900] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]]) | |||
| | |||
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001855&formSubmitReturn=1 ASAP:ABE-0001855] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
| | |||
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6296 ECOCYC:G6296] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene?term=945759 GeneID:945759] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]]) | |||
| | |||
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003477&formSubmitReturn=1 ASAP:ABE-0003477] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
| | |||
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6534 ECOCYC:G6534] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
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[http:// | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
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[http:// | [http://www.ncbi.nlm.nih.gov/gene?term=945584 GeneID:945584] | ||
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[ | [https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]]) | ||
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[http:// | [http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006917&formSubmitReturn=1 ASAP:ABE-0006917] | ||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http:// | [http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | ||
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[http:// | [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7125 ECOCYC:G7125] | ||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[http://www.ncbi.nlm.nih.gov/ | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
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[http://www.ncbi.nlm.nih.gov/ | [http://www.ncbi.nlm.nih.gov/gene?term=946616 GeneID:946616] | ||
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Latest revision as of 15:50, 5 October 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
InsE |
|---|---|
| Synonyms |
IS3 element protein[1], DLP12 prophage; IS3 element protein InsE[1], IS3 element protein InsE[1], B0373[2][1], B0298[2][1], B2088[2][1], B0540[2][1], B1027[2][1], InsE-1[2][1], InsE-2[2][1], InsE-3[2][1], InsE-4[2][1], InsE-5[2][1] , ECK0298, b0298, b0373, b0540, b1027, b2088 |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence | |
| Length | |
| Mol. Wt | |
| pI | |
| Extinction coefficient |
|
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Categories