insE-5:Gene Product(s): Difference between revisions

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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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InsE product
InsE  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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IS3 element protein product<ref name='LIB:Riley_2006'/>, DLP12 prophage; IS3 element protein InsE product<ref name='LIB:Riley_2006'/>, IS3 element protein InsE product<ref name='LIB:Riley_2006'/>, B0373 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0298 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2088 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0540 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1027 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-1 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-2 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-3 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-4 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-5 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''IS3 element protein<ref name='LIB:Riley_2006'/>, DLP12 prophage; IS3 element protein InsE<ref name='LIB:Riley_2006'/>, IS3 element protein InsE<ref name='LIB:Riley_2006'/>, B0373<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0298<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2088<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1027<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsE-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0298, b0298, b0373, b0540, b1027, b2088''
|-
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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IS3 element protein InsE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
IS3 element protein InsE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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===Notes===
===Notes===
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<protect>
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<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20203.Q46aa2784a3377-->
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0006313
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transposition, DNA-mediated
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P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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required fields missing 
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
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!Partner Type!!Partner!!Notes
!|Partner Type!!Partner!!Notes!!References!!Evidence
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===Notes===
===Notes===
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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!align=left {{table heading style}} |Name
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|-
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
|
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[http://biocyc.org/ECOLI/sequence-aa?object=G6534-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6534-MONOMER at EcoCyc]  
<pre></pre>  
<pre></pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
|
||
11.91 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 
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!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
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|-
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
|
||
0 (calc based on 0 Y, 0 W, and 0 C residues)
 
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!align=left {{table heading style}} |Extinction coefficient
||
 
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
 
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!Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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<td>
<!-- motifs column 2-->
<motif_map/>
</td>
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<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-
|-class='sortbottom'
!align=left {{table heading style}} |Structures
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20203.Q46a7b8b7d750f&page=20203&pagename={{FULLPAGENAMEE}} edit table] || || || ||
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<beststructure>
gene=insE-5
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P0CF66 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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|-
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524700 GI:226524700]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_414832.2 GeneID:944952]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524701 GI:226524701]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_414907.2 GeneID:946900]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524703 GI:226524703]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_415072.2 GeneID:945759]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524706 GI:226524706]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_415546.2 GeneID:945584]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/226524731 GI:226524731]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_416592.2 GeneID:946616]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001028&formSubmitReturn=1 ASAP:ABE-0001028]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6168 ECOCYC:G6168]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG40005 EcoGene:EG40005]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944952 GeneID:944952]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001279&formSubmitReturn=1 ASAP:ABE-0001279]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6224 ECOCYC:G6224]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946900 GeneID:946900]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001855&formSubmitReturn=1 ASAP:ABE-0001855]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6296 ECOCYC:G6296]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945759 GeneID:945759]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003477&formSubmitReturn=1 ASAP:ABE-0003477]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6534 ECOCYC:G6534]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6534-MONOMER EcoCyc:G6534-MONOMER]
[http://www.ncbi.nlm.nih.gov/gene?term=945584 GeneID:945584]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|-  
|
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
|
|
[http://www.expasy.ch/cgi-bin/sprot-search-ac?P0ADH3 UniProt:P0ADH3]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0006917&formSubmitReturn=1 ASAP:ABE-0006917]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
|
[http://pfam.sanger.ac.uk/family?acc=PF01527 PFAM:PF01527]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7125 ECOCYC:G7125]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|-  
|
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416592 RefSeq:NP_416592]
[http://www.ncbi.nlm.nih.gov/gene?term=946616 GeneID:946616]
|
|
Escherichia coli str. K-12 substr. MG1655
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===Categories===
===Categories===
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[[Category:GO:0006313_!_transposition, DNA-mediated]]

Latest revision as of 15:50, 5 October 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InsE

Synonyms

IS3 element protein[1], DLP12 prophage; IS3 element protein InsE[1], IS3 element protein InsE[1], B0373[2][1], B0298[2][1], B2088[2][1], B0540[2][1], B1027[2][1], InsE-1[2][1], InsE-2[2][1], InsE-3[2][1], InsE-4[2][1], InsE-5[2][1] , ECK0298, b0298, b0373, b0540, b1027, b2088

Product description

IS3 element protein InsE[2][3]

EC number (for enzymes)



Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

 
Length
Mol. Wt
pI
Extinction coefficient



Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=insE-5 taxon=562,83333 </beststructure>

Models

View models at:

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:226524700

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944952

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GI:226524701

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946900

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GI:226524703

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945759

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GI:226524706

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945584

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GI:226524731

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946616

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

ASAP:ABE-0001028

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6168

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG40005

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944952

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

ASAP:ABE-0001279

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6224

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946900

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

ASAP:ABE-0001855

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6296

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945759

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

ASAP:ABE-0003477

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6534

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945584

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

ASAP:ABE-0006917

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7125

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946616

Escherichia coli str. K-12 substr. MG1655


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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