ypjA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YpjA

Synonyms

adhesin-like autotransporter[1], B2647[2][1], YpjA[2][1] , ECK2644, JW5422, b2647

Product description

adhesin-like autotransporter[2][3]

Overexpression increases adhesion, function unknown; OM autotransporter homolog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0007155

cell adhesion

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003991

P

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0019867

outer membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006315

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNTIHLRCLF RMNPLVWCLW ADVAAKLRSL KRYSVFTFQR MKFMNRTSPY YCRRSVLSLL
ISALIYAPPG MAAFTTNVIG VVNDETVDGN QKVDERGTTN NTHIINHGQQ NVHGGVSNGS
LIESGGYQDI GSHNNFVGQA NNTTINGGRQ SIHDGGISTG TTIESGNQDV YKGGISNGTT
IKGGASRVEG GSANGILIDG GSQIVKVQGH ADGTTINKSG SQDVVQGSLA TNTTINGGRQ
YVEQSTVETT TIKNGGEQRV YESRALDTTI EGGTQSLNSK STAKNTHIYS GGTQIVDNTS
TSDVIEVYSG GVLDVRGGTA TNVTQHDGAI LKTNTNGTTV SGTNSEGAFS IHNHVADNVL
LENGGHLDIN AYGSANKTII KDKGTMSVLT NAKADATRID NGGVMDVAGN ATNTIINGGT
QNINNYGIAT GTNINSGTQN IKSGGKADTT IISSGSRQVV EKDGTAIGSN ISAGGSLIVY
TGGIAHGVNQ ETGSALVANT GAGTDIEGYN KLSHFTITGG EANYVVLENT GELTVVAKTS
AKNTTIDTGG KLIVQKEAKT DSTRLNNGGV LEVQDGGEAK HVEQQSGGAL IASTTSGTLI
EGTNSYGDAF YIRNSEAKNV VLENAGSLTV VTGSRAVDTI INANGKMDVY GKDVGTVLNS
AGTQTIYASA TSDKANIKGG KQTVYGLATE ANIESGEQIV DGGSTEKTHI NGGTQTVQNY
GKAINTDIVS GLQQIMANGT AEGSIINGGS QVVNEGGLAE NSVLNDGGTL DVREKGSATG
IQQSSQGALV ATTRATRVTG TRADGVAFSI EQGAANNILL ANGGVLTVES DTSSDKTQVN
MGGREIVKTK ATATGTTLTG GEQIVEGVAN ETTINDGGIQ TVSANGEAIK TKINEGGTLT
VNDNGKATDI VQNSGAALQT STANGIEISG THQYGTFSIS GNLATNMLLE NGGNLLVLAG
TEARDSTVGK GGAMQNLGQD SATKVNSGGQ YTLGRSKDEF QALARAEDLQ VAGGTAIVYA
GTLADASVSG ATGSLSLMTP RDNVTPVKLE GAVRITDSAT LTLGNGVDTT LADLTAASRG
SVWLNSNNSC AGTSNCEYRV NSLLLNDGDV YLSAQTAAPA TTNGIYNTLT TNELSGSGNF
YLHTNVAGSR GDQLVVNNNA TGNFKIFVQD TGVSPQSDDA MTLVKTGGGD ASFTLGNTGG
FVDLGTYEYV LKSDGNSNWN LTNDVKPNPD PIPNPKPDPK PDPKPDPNPK PDPTPDPTPT
PVPEKRITPS TAAVLNMAAT LPLVFDAELN SIRERLNIMK ASPHNNNVWG ATYNTRNNVT
TDAGAGFEQT LTGMTVGIDS RNDIPEGITT LGAFMGYSHS HIGFDRGGHG SVGSYSLGGY
ASWEHESGFY LDGVVKLNRF KSNVAGKMSS GGAANGSYHS NGLGGHIETG MRFTDGNWNL
TPYASLTGFT ADNPEYHLSN GMKSKSVDTR SIYRELGATL SYNMRLGNGM EVEPWLKAAV
RKEFVDDNRV KVNSDGNFVN YLSGRRGIYQ AGIKASFSST LSGHLGVGYS HSAGVESPWN
AVAGVNWSF
Length

1,569

Mol. Wt

162.773 kDa

pI

5.5 (calculated)

Extinction coefficient

119,070 - 119,695 (calc based on 43 Y, 10 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-29

UniProt Manual:Signal Peptides

UniProt:P52143

Domain

1259..1512

PF03797 Autotransporter beta-domain

PMID:19920124[5]

Domain

1057..1180

PF03212 Pertactin

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ypjA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111474

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948630

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008713

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52143

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7382

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13213

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948630

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003950

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3005

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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