yjcC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YjcC

Synonyms

predicted signal transduction protein (EAL domain containing protein)[1], B4061[2][1], YjcC[2][1] , ECK4053, JW4022, b4061

Product description

conserved protein[2][3]

Putative cyclic-di-GMP phosphodiesterase, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yjgA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yicC

PMID:19402753[5]

MALDI(Z-score):38.150360

Protein

thrS

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [6]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSHRARHQLL ALPGIIFLVL FPIILSLWIA FLWAKSEVNN QLRTFAQLAL DKSELVIRQA
DLVSDAAERY QGQVCTPAHQ KRMLNIIRGY LYINELIYAR DNHFLCSSLI APVNGYTIAP
ADYKREPNVS IYYYRDTPFF SGYKMTYMQR GNYVAVINPL FWSEVMSDDP TLQWGVYDTV
TKTFFSLSKE ASAATFSPLI HLKDLTVQRN GYLYATVYST KRPIAAIVAT SYQRLITHFY
NHLIFALPAG ILGSLVLLLL WLRIRQNYLS PKRKLQRALE KHQLCLYYQP IIDIKTEKCI
GAEALLRWPG EQGQIMNPAE FIPLAEKEGM IEQITDYVID NVFRDLGDYL ATHADRYVSI
NLSASDFHTS RLIARINQKT EQYAVRPQQI KFEVTEHAFL DVDKMTPIIL AFRQAGYEVA
IDDFGIGYSN LHNLKSLNVD ILKIDKSFVE TLTTHKTSHL IAEHIIELAH SLGLKTIAEG
VETEEQVNWL RKRGVRYCQG WFFAKAMPPQ VFMQWMEQLP ARELTRGQ
Length

528

Mol. Wt

60.803 kDa

pI

8.6 (calculated)

Extinction coefficient

91,220 - 91,845 (calc based on 28 Y, 9 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

272..506

PF00563 EAL domain

PMID:19920124[7]

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<motif_map/>

tmhmm.php?gene=yjcC&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjcC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131887

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948568

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013309

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P32701

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11938

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11938

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948568

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001866

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1882

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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