yjbH:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjbH

Synonyms

predicted porin[1], B4029[2][1], YjbH[2][1] , ECK4021, JW3989, b4029

Product description

conserved protein, putative lipoprotein and/or outer membrane porin[2]; predicted porin[3]

Extracellular polysaccharide production[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0031225

anchored to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9901

C

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

clpB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

adhE

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yjgF

PMID:19402753[5]

MALDI(Z-score):17.252487

Protein

yejK

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

uspG

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

mreB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

argG

PMID:19402753[5]

LCMS(ID Probability):99.4

Protein

allC

PMID:19402753[5]

LCMS(ID Probability):98.5

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKKRHLLSLL ALGISTACYG ETYPAPIGPS QSDFGGVGLL QTPTARMARE GELSLNYRDN
DQYRYYSASV QLFPWLETTL RYTDVRTRQY SSVEAFSGDQ TYKDKAFDLK LRLWEESYWL
PQVAVGARDI GGTGLFDAEY LVASKAWGPF DFTLGLGWGY LGTSGNVKNP LCSASDKYCY
RDNSYKQAGS IDGSQMFHGP ASLFGGVEYQ TPWQPLRLKL EYEGNNYQQD FAGKLEQKSK
FNVGAIYRVT DWADVNLSYE RGNTFMFGVT LRTNFNDLRP SYNDNARPQY QPQPQDAILQ
HSVVANQLTL LKYNAGLADP QIQAKGDTLY VTGEQVKYRD SREGIIRANR IVMNDLPDGI
KTIRITENRL NMPQVTTETD VASLKNHLAG EPLGHETTLA QKRVEPVVPQ STEQGWYIDK
SRFDFHIDPV LNQSVGGPEN FYMYQLGVMG TADLWLTDHL LTTGSLFANL ANNYDKFNYT
NPPQDSHLPR VRTHVREYVQ NDVYVNNLQA NYFQHLGNGF YGQVYGGYLE TMFGGAGAEV
LYRPLDSNWA FGLDANYVKQ RDWRSAKDMM KFTDYSVKTG HLTAYWTPSF AQDVLVKASV
GQYLAGDKGG TLEIAKRFDS GVVVGGYATI TNVSKEEYGE GDFTKGVYVS VPLDLFSSGP
TRSRAAIGWT PLTRDGGQQL GRKFQLYDMT SDRSVNFR
Length

698

Mol. Wt

78.491 kDa

pI

6.5 (calculated)

Extinction coefficient

138,550 - 138,925 (calc based on 45 Y, 13 W, and 3 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-17

UniProt Manual:Signal Peptides

UniProt:P32689

Domain

29..693

PF06082 Bacterial putative lipoprotein (DUF940)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yjbH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131855

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948527

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013176

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P32689

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11926

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11926

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948527

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001854

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1870

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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