yjbH:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YjbH |
|---|---|
| Synonyms |
predicted porin[1], B4029[2][1], YjbH[2][1] , ECK4021, JW3989, b4029 |
| Product description |
conserved protein, putative lipoprotein and/or outer membrane porin[2]; predicted porin[3] Extracellular polysaccharide production[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0031225 |
anchored to membrane |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9901 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rplA |
LCMS(ID Probability):99.6 | ||
|
Protein |
clpB |
LCMS(ID Probability):99.6 | ||
|
Protein |
adhE |
LCMS(ID Probability):99.6 | ||
|
Protein |
yjgF |
MALDI(Z-score):17.252487 | ||
|
Protein |
yejK |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplI |
LCMS(ID Probability):99.6 | ||
|
Protein |
uspG |
LCMS(ID Probability):99.6 | ||
|
Protein |
mreB |
LCMS(ID Probability):99.6 | ||
|
Protein |
argG |
LCMS(ID Probability):99.4 | ||
|
Protein |
allC |
LCMS(ID Probability):98.5 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MKKRHLLSLL ALGISTACYG ETYPAPIGPS QSDFGGVGLL QTPTARMARE GELSLNYRDN DQYRYYSASV QLFPWLETTL RYTDVRTRQY SSVEAFSGDQ TYKDKAFDLK LRLWEESYWL PQVAVGARDI GGTGLFDAEY LVASKAWGPF DFTLGLGWGY LGTSGNVKNP LCSASDKYCY RDNSYKQAGS IDGSQMFHGP ASLFGGVEYQ TPWQPLRLKL EYEGNNYQQD FAGKLEQKSK FNVGAIYRVT DWADVNLSYE RGNTFMFGVT LRTNFNDLRP SYNDNARPQY QPQPQDAILQ HSVVANQLTL LKYNAGLADP QIQAKGDTLY VTGEQVKYRD SREGIIRANR IVMNDLPDGI KTIRITENRL NMPQVTTETD VASLKNHLAG EPLGHETTLA QKRVEPVVPQ STEQGWYIDK SRFDFHIDPV LNQSVGGPEN FYMYQLGVMG TADLWLTDHL LTTGSLFANL ANNYDKFNYT NPPQDSHLPR VRTHVREYVQ NDVYVNNLQA NYFQHLGNGF YGQVYGGYLE TMFGGAGAEV LYRPLDSNWA FGLDANYVKQ RDWRSAKDMM KFTDYSVKTG HLTAYWTPSF AQDVLVKASV GQYLAGDKGG TLEIAKRFDS GVVVGGYATI TNVSKEEYGE GDFTKGVYVS VPLDLFSSGP TRSRAAIGWT PLTRDGGQQL GRKFQLYDMT SDRSVNFR |
| Length |
698 |
| Mol. Wt |
78.491 kDa |
| pI |
6.5 (calculated) |
| Extinction coefficient |
138,550 - 138,925 (calc based on 45 Y, 13 W, and 3 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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