yfdX:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfdX

Synonyms

predicted protein[1], B2375[2][1], YfdX[2][1] , ECK2371, JW2372, b2375

Product description

predicted protein[2][3]

Secreted protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ydhY

PMID:16606699[5]

Experiment(s):EBI-1142681
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Periplasm

PMID:11157960[6]

EchoLocation:yfdX


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKRLIMATMV TAILASSTVW AADNAPVAAQ QQTQQVQQTQ KTAAAAERIS EQGLYAMRDV
QVARLALFHG DPEKAKELTN EASALLSDDS TEWAKFAKPG KKTNLNDDQY IVINASVGIS
ESYVATPEKE AAIKIANEKM AKGDKKGAME ELRLAGVGVM ENQYLMPLKQ TRNALADAQK
LLDKKQYYEA NLALKGAEDG IIVDSEALFV N
Length

211

Mol. Wt

22.977 kDa

pI

5.3 (calculated)

Extinction coefficient

19,940 (calc based on 6 Y, 2 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P76520

Domain

55..209

PF10938 YfdX protein

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfdX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130307

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949108

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007835

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76520

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7238

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14146

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949108

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003813

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3898

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Nishino, K & Yamaguchi, A (2001) Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters. J. Bacteriol. 183 1455-8 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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