yehQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YehQ

Synonyms

predicted protein[1], B2122[2][1], YehQ[2][1] , ECK2114, JW2110, b2122

Product description

conserved protein[2]; predicted protein[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007527

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

pdxJ

PMID:16606699[4]

Experiment(s):EBI-1141976

Protein

xapA

PMID:16606699[4]

Experiment(s):EBI-1141976

Protein

groL

PMID:16606699[4]

Experiment(s):EBI-1141976
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MACGESSVMN SLRPELLELT PQALTALSNA GFVKRSLKEL ENGNVPEISH ENDALIATFS
DGVRTQLANG QALKEAQCSC GANGMCRHRV MLVLSYQRLC ATTQSTEKEE EWDPAIWLEE
LATLPDATRK RAQALVAKGI TIELFCAPGE IPSARLPMSD VRFYSRSSIR FARCDCIEGT
LCEHVVLAVQ AFVEAKAQQA EFNHLIWQMR SEHVTSSDDP FASEEGNACR QYVQQLSQTL
WLGGISQPLI HYEAAFNRAL QAAETCNWRW VSESLRQLRA SVDAFHARAS HYNAGECLHQ
LAALNSRLNC AQEMARRDSI GEVPPVPWRT VVGSGIAGEA KLDHLRLVSL GMRCWQDIEH
YGLRIWFTDP DTGSILHLSR SWPRSEQENS PAATRRLFSF QAGALAGGQI VSQAAKRSAD
GELLLATRNR LSSVVPLSPD AWQMLSAPLR QPGIVALREY LRQRPPACIR PLNQVDNLFI
LPVAECISLG WDSSRQTLDA QVISGEGEDN VLTLSLPASA SAPYAVERMA ALLQQTDDPV
CLVSGFVSFV EGQLTLEPRV MMTKTRAWAL DAETTPVAPL PSASVLPVPS TAHQLLIRCQ
ALLIQLLHNG WRYQEQSAIG QA
Length

622

Mol. Wt

68.494 kDa

pI

6.1 (calculated)

Extinction coefficient

90,410 - 92,660 (calc based on 9 Y, 14 W, and 18 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

55..89

PF04434 SWIM zinc finger

PMID:19920124[5]

Domain

144..184

PF04434 SWIM zinc finger

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yehQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0007015

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946654

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33353

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12003

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12003

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946654

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001922

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1941

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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