yeaK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YeaK

Synonyms

conserved protein[1], B1787[2][1], YeaK[2][1] , ECK1785, JW1776, b1787

Product description

conserved protein[2][3]

Function unknown, homologous to YbaK and an insertion domain in ProS; may deacylate mischarged tRNA[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

yahG

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

pepD

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

sohB

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

mreB

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

iscS

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

ycjG

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

prs

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

tdh

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

rsuA

PMID:16606699[5]

Experiment(s):EBI-1140807

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ynjE

PMID:19402753[6]

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTEMAKGSVT HQRLIALLSQ EGADFRVVTH EAVGKCEAVS EIRGTALGQG AKALVCKVKG
NGVNQHVLAI LAADQQADLS QLASHIGGLR ASLASPAEVD ELTGCVFGAI PPFSFHPKLK
LVADPLLFER FDEIAFNAGM LDKSVILKTA DYLRIAQPEL VNFRRTA
Length

167

Mol. Wt

17.85 kDa

pI

7.0 (calculated)

Extinction coefficient

1,490 - 1,865 (calc based on 1 Y, 0 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

30..155

PF04073 YbaK / prolyl-tRNA synthetases associated domain

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeaK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129741

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946303

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005945

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P64483

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6973

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13497

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946303

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003560

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3270

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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