ydiU:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YdiU

Synonyms

conserved protein[1], B1706[2][1], YdiU[2][1] , ECK1704, JW1696, b1706

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1140553

Protein

ydiZ

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTLSFVTRWR DELPETYTAL SPTPLNNARL IWHNTELANT LSIPSSLFKN GAGVWGGEAL
LPGMSPLAQV YSGHQFGVWA GQLGDGRGIL LGEQLLADGT TMDWHLKGAG LTPYSRMGDG
RAVLRSTIRE SLASEAMHYL GIPTTRALSI VTSDSPVYRE TAEPGAMLMR VAPSHLRFGH
FEHFYYRRES EKVRQLADFA IRHYWSHLAD DEDKYRLWFS DVVARTASLI AQWQTVGFAH
GVMNTDNMSL LGLTLDYGPF GFLDDYEPGF ICNHSDHQGR YSFDNQPAVA LWNLQRLAQT
LSPFVAVDAL NEALDSYQQV LLTHYGERMR QKLGFMTEQK EDNALLNELF SLMARERSDY
TRTFRMLSLT EQHSAASPLR DEFIDRAAFD DWFARYRGRL QQDEVSDSER QQLMQSVNPA
LVLRNWLAQR AIEAAEKGDM TELHRLHEAL RNPFSDRDDD YVSRPPDWGK RLEVSCSS
Length

478

Mol. Wt

54.382 kDa

pI

5.7 (calculated)

Extinction coefficient

91,330 - 91,580 (calc based on 17 Y, 12 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

1..454

PF02696 Uncharacterized ACR, YdiU/UPF0061 family

PMID:19920124[7]

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Structure
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Structures

<beststructure> gene=ydiU taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129662

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946219

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005694

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77649

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6924

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13980

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946219

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003512

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3737

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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