ydiJ:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdiJ

Synonyms

predicted FAD-linked oxidoreductase[1], B1687[2][1], YdiJ[2][1] , ECK1684, JW1677, b1687

Product description

predicted FAD-linked oxidoreductase[2][3]

Function unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004113

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016164

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016166

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016167

F

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017900

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006094

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004113

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006094

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016164

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016166

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016167

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017900

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ydfG

PMID:19402753[5]

MALDI(Z-score):21.453935

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIPQISQAPG VVQLVLNFLQ ELEQQGFTGD TATSYADRLT MSTDNSIYQL LPDAVVFPRS
TADVALIARL AAQERYSSLI FTPRGGGTGT NGQALNQGII VDMSRHMNRI IEINPEEGWV
RVEAGVIKDQ LNQYLKPFGY FFAPELSTSN RATLGGMINT DASGQGSLVY GKTSDHVLGV
RAVLLGGDIL DTQPLPVELA ETLGKSNTTI GRIYNTVYQR CRQQRQLIID NFPKLNRFLT
GYDLRHVFND EMTEFDLTRI LTGSEGTLAF ITEARLDITR LPKVRRLVNV KYDSFDSALR
NAPFMVEARA LSVETVDSKV LNLAREDIVW HSVSELITDV PDQEMLGLNI VEFAGDDEAL
IDERVNALCA RLDELIASHQ AGVIGWQVCR ELAGVERIYA MRKKAVGLLG NAKGAAKPIP
FAEDTCVPPE HLADYIAEFR ALLDSHGLSY GMFGHVDAGV LHVRPALDMC DPQQEILMKQ
ISDDVVALTA KYGGLLWGEH GKGFRAEYSP AFFGEELFAE LRKVKAAFDP HNRLNPGKIC
PPEGLDAPMM KVDAVKRGTF DRQIPIAVRQ QWRGAMECNG NGLCFNFDAR SPMCPSMKIT
QNRIHSPKGR ATLVREWLRL LADRGVDPLK LEQELPESGV SLRTLIARTR NSWHANKGEY
DFSHEVKEAM SGCLACKACS TQCPIKIDVP EFRSRFLQLY HTRYLRPLRD HLVATVESYA
PLMARAPKTF NFFINQPLVR KLSEKHIGMV DLPLLSVPSL QQQMVGHRSA NMTLEQLESL
NAEQKARTVL VVQDPFTSYY DAQVVADFVR LVEKLGFQPV LLPFSPNGKA QHIKGFLNRF
AKTAKKTADF LNRMAKLGMP MVGVDPALVL CYRDEYKLAL GEERGEFNVL LANEWLASAL
ESQPVATVSG ESWYFFGHCT EVTALPGAPA QWAAIFARFG AKLENVSVGC CGMAGTYGHE
AKNHENSLGI YELSWHQAMQ RLPRNRCLAT GYSCRSQVKR VEGTGVRHPV QALLEIIK
Length

1,018

Mol. Wt

113.249 kDa

pI

7.1 (calculated)

Extinction coefficient

100,730 - 103,105 (calc based on 27 Y, 11 W, and 19 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

281..539

PF02913 FAD linked oxidases, C-terminal domain

PMID:19920124[6]

Domain

52..193

PF01565 FAD binding domain

PMID:19920124[6]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydiJ taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129643

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946189

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005632

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77748

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6913

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13969

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946189

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003501

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3726

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ydiJ:Gene_Product(s)&oldid=1493618"