ybjI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbjI

Synonyms

conserved protein[1], YbjI[2][1], B0844[2][1] , ECK0834, JW5113, b0844

Product description

FMN phosphatase[2][3]

FMN and erythrose-4-P phosphatase; physiological role unknown; HAD15[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0043726

5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity

PMID:24123841[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc

complete

GO:0009231

riboflavin biosynthetic process

PMID:24123841[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc

complete

GO:0005737

cytoplasm

GO_REF:0000033

IBA: Inferred from Biological Aspect of Ancestor

C

Seeded from EcoCyc

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MDGTFLSDQK TYNRERFMAQ YQQMKAQGIR FVVASGNQYY QLISFFPEIA NEIAFVAENG
GWVVSEGKDV FNGELSKDAF ATVVEHLLTR PEVEIIACGK NSAYTLKKYD DAMKTVAEMY
YHRLEYVDNF DNLEDIFFKF GLNLSDELIP QVQKALHEAI GDIMVSVHTG NGSIDLIIPG
VHKANGLRQL QKLWGIDDSE VVVFGDGGND IEMLRQAGFS FAMENAGSAV VAAAKYRAGS
NNREGVLDVI DKVLKHEAPF DQ
Length

262

Mol. Wt

29.224 kDa

pI

4.6 (calculated)

Extinction coefficient

25,900 - 26,025 (calc based on 10 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..227

PF00702 haloacid dehalogenase-like hydrolase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybjI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111176

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945470

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002877

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75809

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6442

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13678

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945470

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003042

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3442

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Haase, I et al. (2013) Enzymes from the haloacid dehalogenase (HAD) superfamily catalyse the elusive dephosphorylation step of riboflavin biosynthesis. Chembiochem 14 2272-5 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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