ybhF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbhF

Synonyms

fused predicted transporter subunits of ABC superfamily: ATP-binding components[1], B0794[2][1], YbhF[2][1] , ECK0783, JW5104, b0794

Product description

YbhF[2][3];

Component of YbhF/YbhR/YbhS ABC transporter[2][3]

Putative ABC-type transporter, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YbhF/YbhR/YbhS ABC transporter

could be indirect

Protein

aceE

PMID:15690043[5]

Experiment(s):EBI-886646, EBI-893046

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-886646

Protein

tnaA

PMID:19402753[6]

MALDI(Z-score):19.249885

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTRQDMNDAV ITLNGLEKRF PGMDKPAVAP LDCTIHAGYV TGLVGPDGAG KTTLMRMLAG
LLKPDSGSAT VIGFDPIKND GALHAVLGYM PQKFGLYEDL TVMENLNLYA DLRSVTGEAR
KQTFARLLEF TSLGPFTGRL AGKLSGGMKQ KLGLACTLVG EPKVLLLDEP GVGVDPISRR
ELWQMVHELA GEGMLILWST SYLDEAEQCR DVLLMNEGEL LYQGEPKALT QTMAGRSFLM
TSPHEGNRKL LQRALKLPQV SDGMIQGKSV RLILKKEATP DDIRHADGMP EININETTPR
FEDAFIDLLG GAGTSESPLG AILHTVEGTP GETVIEAKEL TKKFGDFAAT DHVNFAVKRG
EIFGLLGPNG AGKSTTFKMM CGLLVPTSGQ ALVLGMDLKE SSGKARQHLG YMAQKFSLYG
NLTVEQNLRF FSGVYGLRGR AQNEKISRMS EAFGLKSIAS HATDELPLGF KQRLALACSL
MHEPDILFLD EPTSGVDPLT RREFWLHINS MVEKGVTVMV TTHFMDEAEY CDRIGLVYRG
KLIASGTPDD LKAQSANDEQ PDPTMEQAFI QLIHDWDKEH SNE
Length

583

Mol. Wt

63.766 kDa

pI

5.5 (calculated)

Extinction coefficient

38,390 - 39,140 (calc based on 11 Y, 4 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

47..167

PF00005 ABC transporter

PMID:19920124[7]

Domain

369..489

PF00005 ABC transporter

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybhF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111168

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945413

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002707

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9U1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6411

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13314

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945413

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003011

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3098

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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