ybfL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbfL

Synonyms

B0705[1], YbfL[1] , ECK0694, JW0695, b0705

Product description

predicted transposase[1]; predicted transposase; receptor protein[2]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002559

F

Seeded from EcoCyc (v14.0)

complete

GO:0004803

transposase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002559

F

Seeded from EcoCyc (v14.0)

complete

GO:0006313

transposition, DNA-mediated

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002559

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ccmH

PMID:16606699[3]

Experiment(s):EBI-1137727

Protein

ybgA

PMID:16606699[3]

Experiment(s):EBI-1137727

Protein

ydcC

PMID:16606699[3]

Experiment(s):EBI-1137727

Protein

yhhI

PMID:16606699[3]

Experiment(s):EBI-1137727

Protein

dnaJ

PMID:16606699[3]

Experiment(s):EBI-1137727

Protein

groL

PMID:16606699[3]

Experiment(s):EBI-1137727
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRDCHSSNDK DVIAIDGKTL RHSYDKSRRR GAIHVISAFS TMHSLVIGQI KTDKKSNEIT
AIPELLNMLD IKGKIITTDA MGCQKDIAEK IQKQGGDYLF AVKGNQGRLN KAFEEKFPLK
ELNNPEHDSY AMSEKSHGRE EIRLHIVCDV PDELIDFTFE WKGLKKLCVA VSFRSIIAEQ
KKEPEMTVRY YISSADLTAE KFATAIRNHW HVENKLHWRL DVVMNEDDCK IRRGNAAELF
SGIRHIAINI LTNDKVFKAG LRRKMRKAAM DRNYLASVLA GSGLS
Length

285

Mol. Wt

32.417 kDa

pI

9.4 (calculated)

Extinction coefficient

25,440 - 26,065 (calc based on 6 Y, 3 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

100..343

PF01609 Transposase DDE domain

PMID:19920124[4]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybfL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0002407

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947075

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75741

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6377

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13417

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947075

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002977

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3193

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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