yacL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YacL

Synonyms

conserved protein[1], B0119[2][1], YacL[2][1] , ECK0118, JW0115, b0119

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rapA

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

nusA

PMID:15690043[5]

Experiment(s):EBI-879082

Protein

rplB

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-879082

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-879082

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rplO

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rpoA

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rpoB

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523, EBI-883170

Protein

rpoC

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rpoZ

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-879082

Protein

rpsD

PMID:15690043[5]

Experiment(s):EBI-879082, EBI-882523

Protein

rpsM

PMID:15690043[5]

Experiment(s):EBI-879082

Protein

arnA

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

crp

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

elaB

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

fur

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

gltA

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

hfq

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

nuoG

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

pnp

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

proV

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rplN

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rplP

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rplQ

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsF

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsJ

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsK

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsL

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsT

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rpsU

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

rsuA

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

slyD

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

uspG

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

yqjI

PMID:15690043[5]

Experiment(s):EBI-882523

Protein

uspG

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

rplN

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

rpsL

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

glpK

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

ykgF

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

glpD

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

zwf

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

mreB

PMID:16606699[6]

Experiment(s):EBI-1135630

Protein

slyD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gltA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

uspG

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

elaB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsL

PMID:19402753[7]

LCMS(ID Probability):99.4

Protein

rplP

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsK

PMID:19402753[7]

LCMS(ID Probability):99.4

Protein

rplO

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rpsA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

nuoG

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

fur

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplQ

PMID:19402753[7]

LCMS(ID Probability):99.5

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):15.079320

Protein

rpsD

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rpsU

PMID:19402753[7]

LCMS(ID Probability):99.5

Protein

rpsJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

kefA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

pnp

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

hfq

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yqjI

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

arnA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpoB

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):9.731086

Protein

rpoC

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):9.171032

Protein

crp

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

nusG

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):39.095383

Protein

proV

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpoZ

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rpoA

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):39.255097

Protein

rsuA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rapA

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):18.730389

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAQCDFGALP GAEEHTMDYE FLRDITGVVK VRMSMGHEVV GHWFNEEVKE NLALLDEVEQ
AAHALKGSER SWQRAGHEYT LWMDGEEVMV RANQLEFAGD EMEEGMNYYD EESLSLCGVE
DFLQVVAAYR NFVQQK
Length

136

Mol. Wt

15.599 kDa

pI

4.2 (calculated)

Extinction coefficient

23,950 - 24,200 (calc based on 5 Y, 3 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..118

PF06062 Uncharacterised protein family (UPF0231)

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yacL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111086

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944809

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000414

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8E5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12605

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12605

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944809

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002328

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2489

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 5.34 5.35 5.36 5.37 5.38 5.39 5.40 5.41 5.42 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 7.31 7.32 7.33 7.34 7.35 7.36 7.37 7.38 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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