wcaA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

WcaA

Synonyms

predicted glycosyl transferase[1], B2059[2][1], WcaA[2][1] , ECK2053, JW2044, b2059

Product description

predicted colanic acid biosynthesis glycosyl transferase[2][3]

Putative colanic acid biosynthesis glycosyl transferase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0009103

lipopolysaccharide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0448

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

fliF

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

fur

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

rplF

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

ydhY

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1141792

Protein

prs

PMID:16606699[5]

Experiment(s):EBI-1141792

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKNNPLISIY MPTWNRQQLA IRAIKSVLRQ DYSNWEMIIV DDCSTSWEQL QQYVTALNDP
RITYIHNDIN SGACAVRNQA IMLAQGEYIT GIDDDDEWTP NRLSVFLAHK QQLVTHAFLY
ANDYVCQGEV YSQPASLPLY PKSPYSRRLF YKRNIIGNQV FTWAWRFKEC LFDTELKAAQ
DYDIFLRMVV EYGEPWKVEE ATQILHINHG EMQITSSPKK FSGYFHFYRK HKDKFDRASK
KYQLFTLYQI RNKRMTWRTL LTLLSVRNGK RLADGIRGR
Length

279

Mol. Wt

33.035 kDa

pI

9.6 (calculated)

Extinction coefficient

69,330 - 69,830 (calc based on 17 Y, 8 W, and 4 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

8..172

PF00535 Glycosyl transferase family 2

PMID:19920124[6]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=wcaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129999

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946570

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006816

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77414

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7104

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13569

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946570

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003690

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3339

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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