uspG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UspG

Synonyms

universal stress protein UP12[1], YzzU[2][1], UspG[2][1], YbdQ[2][1], B0607[2][1], UP12[2][1] , ECK0601, JW0600, UP12, ybdQ, yzzU, b0607

Product description

universal stress protein UP12[2][3];

Component of universal stress protein UP12[3]

Stress protein, induced in stationary phase; native GroEL substrate; heat shock; mutant sensitive to CCCP; dimeric[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

PMID:16460009[5]

IDA: Inferred from Direct Assay

C

complete

GO:0046777

protein amino acid autophosphorylation

PMID:16460009[5]

IDA: Inferred from Direct Assay

P

complete

GO:0005515

protein binding

PMID:16460009[5]

IPI: Inferred from Physical Interaction

EcoliWiki:uspG


F

UspG is homodimeric (Figure 8).

complete

GO:0004017

adenylate kinase activity

PMID:16460009[5]

IDA: Inferred from Direct Assay

F

complete

GO:0018117

protein amino acid adenylylation

PMID:16460009[5]

IDA: Inferred from Direct Assay

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of universal stress protein UP12

could be indirect

Protein

dnaJ

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

groL

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

hldD

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

secA

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-878894, EBI-894882

Protein

ycaO

PMID:15690043[6]

Experiment(s):EBI-878894

Protein

putA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

ahpF

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

sdhA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

xylA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

dnaJ

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

rpoC

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

glpD

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

dnaK

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

dadA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

atpA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

dnaE

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

lacZ

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

carA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

ppsA

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

mukB

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

rpoB

PMID:16606699[7]

Experiment(s):EBI-1137384

Protein

rplL

PMID:15690043[6]

Experiment(s):EBI-882058

Protein

rplW

PMID:15690043[6]

Experiment(s):EBI-882058

Protein

secB

PMID:15690043[6]

Experiment(s):EBI-882058

Protein

artJ

PMID:16606699[7]

Experiment(s):EBI-1138204

Protein

rfaD

PMID:19402753[8]

LCMS(ID Probability):94.6 MALDI(Z-score):39.255784

Protein

ycaO

PMID:19402753[8]

MALDI(Z-score):21.221468

Protein

secA

PMID:19402753[8]

MALDI(Z-score):18.686390

Protein

groS

PMID:19402753[8]

MALDI(Z-score):28.178722

Protein

dnaJ

PMID:19402753[8]

MALDI(Z-score):36.982560

Protein

rplL

PMID:19402753[8]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:8740179[9], PMID:9298646[10], PMID:9600841[11], PMID:12071968[12], PMID:16460009[5]

EchoLocation:uspG


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MYKTIIMPVD VFEMELSDKA VRHAEFLAQD DGVIHLLHVL PGSASLSLHR FAADVRRFEE
HLQHEAQERL QTMVSHFTID PSRIKQHVRF GSVRDEVNEL AEELGADVVV IGSRNPSIST
HLLGSNASSV IRHANLPVLV VR
Length

142

Mol. Wt

15.934 kDa

pI

6.5 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Modification Site

128

phosphorylation site at S128

probability greater than 75%

PMID:17938405[13]

Domain

1..142

PF00582 Universal stress protein family

PMID:19920124[14]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=uspG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128590

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945229

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002095

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39177

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6334

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12683

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945229

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002941

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2547

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Weber, A & Jung, K (2006) Biochemical properties of UspG, a universal stress protein of Escherichia coli. Biochemistry 45 1620-8 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Pasquali, C et al. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17 547-55 PubMed
  10. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  11. ↑ Wilkins, MR et al. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J. Mol. Biol. 278 599-608 PubMed
  12. ↑ Bochkareva, ES et al. (2002) Identification and characterization of the Escherichia coli stress protein UP12, a putative in vivo substrate of GroEL. Eur. J. Biochem. 269 3032-40 PubMed
  13. ↑ Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed
  14. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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