uspF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UspF

Synonyms

stress-induced protein, ATP-binding protein[1], B1376[2][1], YzzL[2][1], UspF[2][1], YnaF[2][1] , ECK1371, JW1370, ynaF, yzzL, b1376

Product description

nucleotide binding protein[2]; nucleotide binding filament protein[3]

Stress-induced protein, binds ATP; dimer[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006950

response to stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006016

P

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

PMID:12381839[5]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplO

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

ssuE

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rplD

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

paaB

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

yfjM

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rpsM

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

hflK

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rplE

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rluC

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

ycgL

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

nadE

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

matC

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rplS

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

ybaO

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

intB

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

secB

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rpsI

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

cybC

PMID:16606699[6]

Experiment(s):EBI-1139703

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ihfA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

secA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yohF

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

lptB

PMID:19402753[7]

LCMS(ID Probability):99.4

Protein

argS

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:8391533[8]

EchoLocation:uspF


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNSVITQKVS SGVTLYADTK TGGFMNRTIL VPIDISDSEL TQRVISHVEE EAKIDDAEVH
FLTVIPSLPY YASLGLAYSA ELPAMDDLKA EAKSQLEEII KKFKLPTDRV HVHVEEGSPK
DRILELAKKI PAHMIIIASH RPDITTYLLG SNAAAVVRHA ECSVLVVR
Length

168

Mol. Wt

18.503 kDa

pI

6.2 (calculated)

Extinction coefficient

7,450 - 7,575 (calc based on 5 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..144

PF00582 Universal stress protein family

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=uspF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111262

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945948

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004605

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37903

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6699

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12674

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945948

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003294

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2539

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Saveanu, C et al. (2002) Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function. Protein Sci. 11 2551-60 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Nyström, T & Neidhardt, FC (1993) Isolation and properties of a mutant of Escherichia coli with an insertional inactivation of the uspA gene, which encodes a universal stress protein. J. Bacteriol. 175 3949-56 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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