tufB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

TufB protein chain elongation factor EF-Tu

Synonyms

B3980[1], PulT[1], KirT[1], TufB[1], EF-Tu[1] , ECK3971, JW3943, kirT, pulT, b3980

Product description

elongation factor Tu[1][2]

EF-Tu, Elongation Factor-Translation, unstable; GTP-dependent binding of aa-tRNA to the A-site of ribosomes; has intrinsic GTPase activity when bound to kirromycin[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology

elongation factor Tu

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions

elongation factor Tu

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

secA

PMID:19402753[4]

LCMS(ID Probability):99.0 MALDI(Z-score):26.150506

Protein

uspG

PMID:19402753[4]

LCMS(ID Probability):99.0 MALDI(Z-score):22.024176

Protein

mreB

PMID:19402753[4]

MALDI(Z-score):33.654448

Protein

dnaJ

PMID:19402753[4]

LCMS(ID Probability):99.0 MALDI(Z-score):19.601403

Protein

tsf

PMID:19402753[4]

LCMS(ID Probability):99.6 MALDI(Z-score):34.848841

Protein

valS

PMID:19402753[4]

LCMS(ID Probability):99.0

Protein

metK

PMID:19402753[4]

MALDI(Z-score):19.931900

Protein

ybeD

PMID:19402753[4]

LCMS(ID Probability):99.0 MALDI(Z-score):17.631606

Protein

acrF

PMID:19402753[4]

LCMS(ID Probability):99.0

Protein

yaaA

PMID:19402753[4]

LCMS(ID Probability):99.0

Protein

ydhQ

PMID:19402753[4]

LCMS(ID Probability):99.0

Protein

xylA

PMID:19402753[4]

LCMS(ID Probability):99.0

Protein

afuC

PMID:19402753[4]

LCMS(ID Probability):99.0

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSKEKFERTK PHVNVGTIGH VDHGKTTLTA AITTVLAKTY GGAARAFDQI DNAPEEKARG
ITINTSHVEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVAATD GPMPQTREHI
LLGRQVGVPY IIVFLNKCDM VDDEELLELV EMEVRELLSQ YDFPGDDTPI VRGSALKALE
GDAEWEAKIL ELAGFLDSYI PEPERAIDKP FLLPIEDVFS ISGRGTVVTG RVERGIIKVG
EEVEIVGIKE TQKSTCTGVE MFRKLLDEGR AGENVGVLLR GIKREEIERG QVLAKPGTIK
PHTKFESEVY ILSKDEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMV
VTLIHPIAMD DGLRFAIREG GRTVGAGVVA KVLS
Length

394

Mol. Wt

43.313 kDa

pI

5.3 (calculated)

Extinction coefficient

20,400 - 20,775 (calc based on 10 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=tufB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131810

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948482

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013020

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6N1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11037

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11037

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948482

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001026

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1030

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed

Categories

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