trmI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YggH

Synonyms

tRNA (m7G46) methyltransferase, SAM-dependent[1], B2960[2][1], YggH[2][1], TrmB[2][1], TrmI[3][1] , ECK2955, JW2927, trmB?, yggH, b2960

Product description

tRNA (m7G46) methyltransferase[2][3]

tRNA (m7G46) methyltransferase, SAM-dependent; monomeric[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0006400

tRNA modification

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01057

P

Seeded from EcoCyc (v14.0)

complete

GO:0006400

tRNA modification

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003358

P

Seeded from EcoCyc (v14.0)

complete

GO:0008033

tRNA processing

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0819

P

Seeded from EcoCyc (v14.0)

complete

GO:0008168

methyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0489

F

Seeded from EcoCyc (v14.0)

complete

GO:0008176

tRNA (guanine-N7-)-methyltransferase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01057

F

Seeded from EcoCyc (v14.0)

complete

GO:0008176

tRNA (guanine-N7-)-methyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003358

F

Seeded from EcoCyc (v14.0)

complete

GO:0008176

tRNA (guanine-N7-)-methyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.1.1.33

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybhS

PMID:16606699[5]

Experiment(s):EBI-1144466

Protein

pheA

PMID:16606699[5]

Experiment(s):EBI-1144466

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1144466

Protein

aceE

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

yncD

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

deaD

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

glnS

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

hrpA

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

lpdA

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

mglB

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

pssA

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplB

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplD

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplE

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplF

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplI

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplJ

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplS

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-882273, EBI-889884

Protein

rplX

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsA

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsC

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsD

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-882273, EBI-889884

Protein

rpsM

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsP

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsU

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

srmB

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

ybeZ

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

ycbY

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

yfiF

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

ygiF

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

ynbC

PMID:15690043[6]

Experiment(s):EBI-882273

Protein

rpsF

PMID:15690043[6]

Experiment(s):EBI-889884

Protein

rpsT

PMID:15690043[6]

Experiment(s):EBI-889884

Protein

rpsF

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[7]

MALDI(Z-score):20.937463

Protein

rplM

PMID:19402753[7]

MALDI(Z-score):29.894375

Protein

rplI

PMID:19402753[7]

MALDI(Z-score):30.476627

Protein

rlmL

PMID:19402753[7]

MALDI(Z-score):22.605475

Protein

rpsM

PMID:19402753[7]

MALDI(Z-score):20.695589

Protein

ygiF

PMID:19402753[7]

MALDI(Z-score):23.709548

Protein

srmB

PMID:19402753[7]

MALDI(Z-score):22.178982

Protein

rpsC

PMID:19402753[7]

MALDI(Z-score):34.335309

Protein

rpsD

PMID:19402753[7]

MALDI(Z-score):36.279654

Protein

rplB

PMID:19402753[7]

MALDI(Z-score):31.970126

Protein

glnS

PMID:19402753[7]

MALDI(Z-score):17.053160

Protein

pssA

PMID:19402753[7]

MALDI(Z-score):18.875040

Protein

rplD

PMID:19402753[7]

MALDI(Z-score):24.245773

Protein

yfiF

PMID:19402753[7]

MALDI(Z-score):36.673169

Protein

ybeZ

PMID:19402753[7]

MALDI(Z-score):23.079093

Protein

deaD

PMID:19402753[7]

MALDI(Z-score):25.207967

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNDVISPEF DENGRPLRRI RSFVRRQGRL TKGQEHALEN YWPVMGVEFS EDMLDFPALF
GREAPVTLEI GFGMGASLVA MAKDRPEQDF LGIEVHSPGV GACLASAHEE GLSNLRVMCH
DAVEVLHKMI PDNSLRMVQL FFPDPWHKAR HNKRRIVQVP FAELVKSKLQ LGGVFHMATD
WEPYAEHMLE VMSSIDGYKN LSESNDYVPR PASRPVTKFE QRGHRLGHGV WDLMFERVK
Length

239

Mol. Wt

27.306 kDa

pI

6.9 (calculated)

Extinction coefficient

27,960 - 28,210 (calc based on 4 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

42..238

PF02390 Putative methyltransferase

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=trmI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130861

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947448

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009714

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8I5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11779

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11779

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947448

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001713

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1727

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 6.30 6.31 6.32 6.33 6.34 6.35 6.36 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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