trmI:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
trmI |
|---|---|
| Mnemonic |
tRNA methyltransferase |
| Synonyms | |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
66.82 minutes |
MG1655: 3100874..3100155 |
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NC_012967: 2987794..2988513 |
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NC_012759: 2987303..2988022 |
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W3110 |
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W3110: 3101508..3100789 |
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DH10B: 3195943..3195224 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
trmBN152A |
N152A |
No effect |
seeded from UniProt:P0A8I5 | ||||
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trmBE220A |
E220A |
Reduces catalytic activity 10-fold |
seeded from UniProt:P0A8I5 | ||||
|
trmBR150A |
R150A |
Reduces catalytic activity about 3- fold |
seeded from UniProt:P0A8I5 | ||||
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trmBR155A |
R155A |
Loss of activity |
seeded from UniProt:P0A8I5 | ||||
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trmBD180A |
D180A |
Reduces catalytic activity over 10- fold |
seeded from UniProt:P0A8I5 | ||||
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trmBH151A |
H151A |
Reduces catalytic activity over 10- fold |
seeded from UniProt:P0A8I5 | ||||
|
trmBT217A |
T217A |
Reduces catalytic activity over 10- fold |
seeded from UniProt:P0A8I5 | ||||
|
trmBR26A |
R26A |
Reduces catalytic activity over 10- fold |
seeded from UniProt:P0A8I5 | ||||
|
trmBD144A |
D144A |
Loss of activity |
seeded from UniProt:P0A8I5 | ||||
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trmBR154A |
R154A |
Loss of activity |
seeded from UniProt:P0A8I5 | ||||
|
ΔyggH735::kan |
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trmB1 |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Kohara Phage |
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|
Kohara Phage |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
