sufB:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SufB

Synonyms

component of SufBCD complex[1], YnhE[2][1], SufB[2][1], B1683[2][1] , ECK1679, JW5273, ynhE, b1683

Product description

component of SufB-SufC-SufD cysteine desulfurase (SufS) activator complex[2][3];

Component of SufB-SufC-SufD cysteine desulfurase (SufS) activator complex[3]

Complexed with SufC and SufD[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000825

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010231

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:15690043[5]

IPI: Inferred from Physical Interaction

UniProtKB:P77689

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17350958[6]

IPI: Inferred from Physical Interaction

UniProtKB:P76194

F

Seeded from EcoCyc (v14.0)

complete

GO:0016226

iron-sulfur cluster assembly

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000825

P

Seeded from EcoCyc (v14.0)

complete

GO:0016226

iron-sulfur cluster assembly

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010231

P

Seeded from EcoCyc (v14.0)

complete

GO:0016226

iron-sulfur cluster assembly

PMID:12089140[7]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

PMID:17350958[6]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of SufB-SufC-SufD cysteine desulfurase (SufS) activator complex

could be indirect

Protein

sufC

PMID:15690043[5]

Experiment(s):EBI-889086, EBI-889106

Protein

sufC

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

sufD

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):38.795348

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

membrane

From EcoCyc[3]


edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MWLWRKLWGI GGTMSRNTEA TDDVKTWTGG PLNYKEGFFT QLATDELAKG INEEVVRAIS
AKRNEPEWML EFRLNAYRAW LEMEEPHWLK AHYDKLNYQD YSYYSAPSCG NCDDTCASEP
GAVQQTGANA FLSKEVEAAF EQLGVPVREG KEVAVDAIFD SVSVATTYRE KLAEQGIIFC
SFGEAIHDHP ELVRKYLGTV VPGNDNFFAA LNAAVASDGT FIYVPKGVRC PMELSTYFRI
NAEKTGQFER TILVADEDSY VSYIEGCSAP VRDSYQLHAA VVEVIIHKNA EVKYSTVQNW
FPGDNNTGGI LNFVTKRALC EGENSKMSWT QSETGSAITW KYPSCILRGD NSIGEFYSVA
LTSGHQQADT GTKMIHIGKN TKSTIISKGI SAGHSQNSYR GLVKIMPTAT NARNFTQCDS
MLIGANCGAH TFPYVECRNN SAQLEHEATT SRIGEDQLFY CLQRGISEED AISMIVNGFC
KDVFSELPLE FAVEAQKLLA ISLEHSVG
Length

508

Mol. Wt

56.33 kDa

pI

5.1 (calculated)

Extinction coefficient

84,800 - 86,425 (calc based on 20 Y, 10 W, and 13 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

229..466

PF01458 Uncharacterized protein family (UPF0051)

PMID:19920124[9]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sufB taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111315

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945753

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005621

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77522

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6909

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13965

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945753

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003498

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3723

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 Layer, G et al. (2007) SufE transfers sulfur from SufS to SufB for iron-sulfur cluster assembly. J. Biol. Chem. 282 13342-50 PubMed
  7. ↑ Takahashi, Y & Tokumoto, U (2002) A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids. J. Biol. Chem. 277 28380-3 PubMed
  8. ↑ 8.0 8.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=sufB:Gene_Product(s)&oldid=1493614"