stfR:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
StfR |
|---|---|
| Synonyms |
Rac prophage; predicted tail fiber protein[1], B1372[2][1], YnaB[2][1], StfR[2][1] , ECK1367, JW1366, ynaB, b1372 |
| Product description |
putative membrane protein[2][3] Side-tail fiber protein, Rac prophage[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005198 |
structural molecule activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rplB |
Experiment(s):EBI-1139684 | ||
|
Protein |
yegQ |
Experiment(s):EBI-1139684 | ||
|
Protein |
polA |
Experiment(s):EBI-1139684 | ||
|
Protein |
arpA |
Experiment(s):EBI-1139684 | ||
|
Protein |
pgaC |
Experiment(s):EBI-1139684 | ||
|
Protein |
metL |
Experiment(s):EBI-1139684 | ||
|
Protein |
aceE |
Experiment(s):EBI-1139684 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MNMAVKISGV LKDGTGKPVQ NCTIQLKAKR NSTTVVVNTL ASENPDEAGR YSMDVEYGQY SVILLVEGFP PSHAGTITVY EDSQPGTLND FLGAMTEDDA RPEALRRFEL MVEEVARNAS AVAQNTAAAK KSASDASTSA REAATHAADA ADSARAASTS AGQAASSAQS ASSSAGTAST KATEASKSAA AAESSKSAAA TSAGAAKTSE TNASASLQSA ATSASTATTK ASEAATSARD AAASKEAAKS SETNASSSAS SAASSATAAG NSAKAAKTSE TNARSSETAA GQSASAAAGS KTAAASSASA ASTSAGQASA SATAAGKSAE SAASSASTAT TKAGEATEQA SAAARSASAA KTSETNAKAS ETSAESSKTA AASSASSAAS SASSASASKD EATRQASAAK SSATTASTKA TEAAGSATAA AQSKSTAESA ATRAETAAKR AEDIASAVAL EDASTTKKGI VQLSSATNST SETLAATPKA VKSAYDNAEK RLQKDQNGAD IPDKGCFLNN INAVSKTDFA DKRGMRYVRV NAPAGATSGK YYPVVVMRSA GSVSELASRV IITTATRTAG DPMNNCEFNG FVMPGGWTDR GRYAYGMFWQ YQNNERAIHS IMMSNKGDDL RSVFYVDGAA FPVFAFIEDG LSISAPGADL VVNDTTYKFG ATNPATECIA ADVILDFKSG RGFYESHSLI VNDNLSCKKL FATDEIVARG GNQIRMIGGE YGALWRNDGA KTYLLLTNQG DVYGGWNTLR PFAIDNATGE LVIGTKLSAS LNGNALTATK LQTPRRVSGV EFDGSKDITL TAAHVAAFAR RATDTYADAD GGVPWNAESG AYNVTRSGDS YILVNFYTGV GSCRTLQMKA HYRNGGLFYR SSRDGYGFEE DWAEVYTSKN LPPESYPVGA PIPWPSDTVP SGYALMQGQA FDKSAYPKLA AAYPSGVIPD MRGWTIKGKP ASGRAVLSQE QDGIKSHTHS ASASSTDLGT KTTSSFDYGT KSTNNTGAHT HSVSGSTNSA GAHTHSLANV NTASANSGAG SASTRLSVVH NQNYATSSAG AHTHSLSGTA ASAGAHAHTV GIGAHTHSVA IGSHGHTITV NAAGNAENTV KNIAFNYIVR LA |
| Length |
1,122 |
| Mol. Wt |
114.025 kDa |
| pI |
7.7 (calculated) |
| Extinction coefficient |
91,680 - 92,430 (calc based on 32 Y, 8 W, and 6 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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