sppA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
sppA |
|---|---|
| Mnemonic |
Signal peptide peptidase |
| Synonyms |
ECK1764, b1766, JW1755[1], JW1755 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
39.81 minutes |
MG1655: 1846861..1848717 |
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NC_012967: 1826065..1827921 |
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NC_012759: 1738920..1740776 |
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W3110 |
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W3110: 1850551..1852407 |
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DH10B: 1937432..1939288 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔsppA (Keio:JW1755) |
deletion |
deletion |
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|
sppAE252H |
E252H |
(in strain: ECOR 16) |
Strain variation; seeded from UniProt:P08395 | ||||
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sppAE252K |
E252K |
(in strain: ECOR 49) |
Strain variation; seeded from UniProt:P08395 | ||||
|
sppAE252Q |
E252Q |
(in strain: ECOR 38, ECOR 39, ECOR 40, ECOR 50, ECOR 65 and ECOR 68) |
Strain variation; seeded from UniProt:P08395 | ||||
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sppAA294T |
A294T |
(in strain: ECOR 38, ECOR 39, ECOR 40, ECOR 49, ECOR 50 and ECOR 65) |
Strain variation; seeded from UniProt:P08395 | ||||
|
sppAV151I |
V151I |
(in strain: ECOR 49 and ECOR 50) |
Strain variation; seeded from UniProt:P08395 | ||||
|
sppAG186S |
G186S |
(in strain: ECOR 16) |
Strain variation; seeded from UniProt:P08395 | ||||
|
ΔsppA736::kan |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1755 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCGAACCCTTTGGCGATTTAT Primer 2:CCACGCATGTTGGCGCAGGTCAG | |
|
Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: 61% [6] | ||
|
Linked marker |
est. P1 cotransduction: 43% [6] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
