slt:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
Slt |
|---|---|
| Synonyms |
lytic murein transglycosylase, soluble [1], B4392 [2][1], SltY [2][1], Slt [2][1], Slt70 [2][1] , ECK4384, JW4355, sltY, b4392 |
| Product description |
soluble lytic murein transglycosylase[2][3] Soluble lytic murein transglycosylase Slt70, major autolysin, periplasmic[4] |
| EC number (for enzymes) | |
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0030288 |
outer membrane-bounded periplasmic space |
IDA: Inferred from Direct Assay |
C |
Seeded from Riley et al 2006 [1]. |
complete | |||
| GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008933 |
lytic transglycosylase activity |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016829 |
lyase activity |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016837 |
carbon-oxygen lyase activity, acting on polysaccharides |
GOA:spec |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
Periplasm |
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|
periplasm |
| |||
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MYLHLEDALV EKAKQVTWRL LAAGVCLLTV SSVARADSLD EQRSRYAQIK QAWDNRQMDV VEQMMPGLKD YPLYPYLEYR QITDDLMNQP AVTVTNFVRA NPTLPPARTL QSRFVNELAR REDWRGLLAF SPEKPGTTEA QCNYYYAKWN TGQSEEAWQG AKELWLTGKS QPNACDKLFS VWRASGKQDP LAYLERIRLA MKAGNTGLVT VLAGQMPADY QTIASAIISL ANNPNTVLTF ARTTGATDFT RQMAAVAFAS VARQDAENAR LMIPSLAQAQ QLNEDQIQEL RDIVAWRLMG NDVTDEQAKW RDDAIMRSQS TSLIERRVRM ALGTGDRRGL NTWLARLPME AKEKDEWRYW QADLLLERGR EAEAKEILHQ LMQQRGFYPM VAAQRIGEEY ELKIDKAPQN VDSALTQGPE MARVRELMYW NLDNTARSEW ANLVKSKSKT EQAQLARYAF NNQWWDLSVQ ATIAGKLWDH LEERFPLAYN DLFKRYTSGK EIPQSYAMAI ARQESAWNPK VKSPVGASGL MQIMPGTATH TVKMFSIPGY SSPGQLLDPE TNINIGTSYL QYVYQQFGNN RIFSSAAYNA GPGRVRTWLG NSAGRIDAVA FVESIPFSET RGYVKNVLAY DAYYRYFMGD KPTLMSATEW GRRY |
| Length |
654 |
| Mol. Wt |
74.408 kDa |
| pI |
8.8 (calculated) |
| Extinction coefficient |
154,700 - 155,075 (calc based on 30 Y, 20 W, and 3 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 Engel, H et al. (1991) Murein-metabolizing enzymes from Escherichia coli: sequence analysis and controlled overexpression of the slt gene, which encodes the soluble lytic transglycosylase. J. Bacteriol. 173 6773-82 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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