rsgA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RsgA

Synonyms

ribosome small subunit-dependent GTPase A[1], B4161[2][1], YjeQ[2][1], RsgA[2][1] , ECK4157, engC, JW4122, yjeQ, b4161

Product description

ribosome small subunit-dependent GTPase A[2][3]

Ribosome-stimulated GTPase, function unknown; low adundance protein; putative RNA binding protein[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003924

GTPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01820

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004881

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010914

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:16606699[5]

IPI: Inferred from Physical Interaction

UniProtKB:P23524

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01820

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004881

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010914

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceE

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

eutA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

fusA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

gapA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

groL

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplD

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplL

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rplW

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpmG

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsC

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsJ

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsM

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsN

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

rpsP

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

wcaJ

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

yaiW

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

ybaL

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

ybeR

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

ydaY

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

ydiA

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

pabB

PMID:15690043[6]

Experiment(s):EBI-886442

Protein

garK

PMID:16606699[5]

Experiment(s):EBI-1147594

Protein

groS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groL

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

fusA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpmG

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ppsR

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ybaL

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

eutA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

pabB

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

wcaJ

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ybeR

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yaiW

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNANHQRRLK TSKEKPDYDD NLFGEPDEGI VISRFGMHAD VESADGDVHR CNIRRTIRSL
VTGDRVVWRP GKPAAEGVNV KGIVEAVHER TSVLTRPDFY DGVKPIAANI DQIVIVSAIL
PELSLNIIDR YLVACETLQI EPIIVLNKID LLDDEGMAFV NEQMDIYRNI GYRVLMVSSH
TQDGLKPLEE ALTGRISIFA GQSGVGKSSL LNALLGLQKE ILTNDISDNS GLGQHTTTAA
RLYHFPHGGD VIDSPGVREF GLWHLEPEQI TQGFVEFHDY LGLCKYRDCK HDTDPGCAIR
EAVEEGKIAE TRFENYHRIL ESMAQVKTRK NFSDTDD
Length

337

Mol. Wt

37.682 kDa

pI

5.2 (calculated)

Extinction coefficient

24,410 - 25,035 (calc based on 9 Y, 2 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

173..334

PF03193 Protein of unknown function, DUF258

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rsgA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111696

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948674

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013626

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39286

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7841

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12479

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948674

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004337

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2372

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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