rhsE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

RhsE

Synonyms

rhsE element core protein RshE[1], B1456[2][1], RhsE[2][1] , ECK1450, JW1451, b1456

Product description

RhsE protein in rhs element[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpmE

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

uup

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

ybfA

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

rhsC

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

relE

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

yeeT

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

groL

PMID:16606699[4]

Experiment(s):EBI-1136918, EBI-1136918

Protein

dnaK

PMID:16606699[4]

Experiment(s):EBI-1136918, EBI-1136918

Protein

dnaE

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

glnG

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

tatE

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

rpsT

PMID:16606699[4]

Experiment(s):EBI-1136918

Protein

minE

PMID:16606699[4]

Experiment(s):EBI-1136918
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSTRLTTLSH TSEGHRVSVH YGYDDKGRLT GERQTVENPE TGELLWHHET GHAYNEQGLA
NRVTPDSLPP VEWLTYGSGY LAGMKLGGTP LLEFTRDRLH RETVRSFGSM AGSNAAYKLT
STYTPAGQLQ SQHLNSLVYD RDYGWNDNGD LVRISGPRQT REYGYSATGR LESVRTLAPD
LDIRIPYATD PAGNRLPDPE LHPDSTLTVW PDNRIAEDAH YVYRHDEYGR LTEKTDRIPA
GVIRTDDERT HHYHYDSQHR LVFYTRIQHG EPLVESRYLY DPLGRRMAKR VWRRERDLTG
WMSLSRKPEV TWYGWDGDRL TTVQTDTTRI QTVYEPGSFT PLIRVETENG EREKAQRRSL
AETLQQEGSE NGHGVVFPAE LVRLLDRLEE EIRADRVSSE SRAWLAQCGL TVEQLARQVE
PEYTPARKVH FYHCDHRGLP LALISEDGNT AWRGEYDEWG NQLNEENPHH LHQPYRLPGQ
QHDEESGLYY NRHRHYDPLQ GRYITPDPIG LRGGWNMYQY PLNPIQVIDP MGLDAIENMT
SGGLIYAVSG VPGLIAANSI TNSAYQFGYD MDAIVGGAHN GAADAMRHCY LMCRMTKTFG
STIADVIGKN HEAAGDRQGQ PAKERIMDLK NNTVGIACGD FSAKCSDACI EKYNTGQLFG
LDGIKADNPI KAKQGSSDAS NY
Length

682

Mol. Wt

77.141 kDa

pI

6.2 (calculated)

Extinction coefficient

122,620 - 123,495 (calc based on 38 Y, 12 W, and 7 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

429..469

PF03527 RHS protein

PMID:19920124[5]

Domain

225..270

PF05593 RHS Repeat

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rhsE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GeneID:946026

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P24211

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946026

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000008

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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