ratB:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
RatB |
|---|---|
| Synonyms |
predicted protein[1], B2618[2][1], YfjF[2][1] , RatB, ECK2614, JW2599, b2618 |
| Product description |
"RatB is predicted to be the antitoxin for the RatA toxin, but no antitoxin activity was observed (Zhang & Inouye 2011)."[3] Member of UPF0125 family.[3] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rplB |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpsI |
Experiment(s):EBI-1143500 | ||
|
Protein |
pepD |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpsG |
Experiment(s):EBI-1143500 | ||
|
Protein |
yhgF |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpsD |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpoB |
Experiment(s):EBI-1143500 | ||
|
Protein |
slyD |
Experiment(s):EBI-1143500 | ||
|
Protein |
putA |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpsC |
Experiment(s):EBI-1143500 | ||
|
Protein |
rplD |
Experiment(s):EBI-1143500 | ||
|
Protein |
hsdR |
Experiment(s):EBI-1143500 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1143500 | ||
|
Protein |
rhsD |
Experiment(s):EBI-1143500 | ||
|
Protein |
rplF |
Experiment(s):EBI-1143500 | ||
|
Protein |
nfnB |
Experiment(s):EBI-1143500 | ||
|
Protein |
rpoC |
Experiment(s):EBI-1143500 | ||
|
Protein |
lacZ |
Experiment(s):EBI-1143500 | ||
|
Protein |
rhsC |
Experiment(s):EBI-1143500 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MRKRFTVPGK IAVEVAYALP EKQYLQRVTL QEGATVEEAI RASGLLELRT DIDLTKNKVG IYSRPAKLSD SVHDGDRVEI YRPLIADPKE LRRQRAEKSA NK |
| Length |
102 |
| Mol. Wt |
11.577 kDa |
| pI |
10.0 (calculated) |
| Extinction coefficient |
5,960 (calc based on 4 Y, 0 W, and 0 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 4.15 4.16 4.17 4.18 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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